Candidatus Lokiarchaeum ossiferum: NEF87_002551
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Entry
NEF87_002551 CDS
T09593
Name
(GenBank) Exosome complex component Rrp4
KO
K03679
exosome complex component RRP4
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF87_002551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_002551
Messenger RNA biogenesis [BR:
lob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NEF87_002551
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NEF87_002551
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N
KH_1
RRP40_S1
KH_2
ECR1_N_2
RRP4_S1
DNA_pol3_a_NII
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
UYP46266
LinkDB
All DBs
Position
complement(3023945..3024706)
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AA seq
253 aa
AA seq
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METPENTTPTTSREIVTPGMTLSTDPSLIPGRGAIRTEAGEIISLFVGFKETRGKYMNVV
PLNGLYNPQMGDKVIARVIGKTPVKFLMDINSKYLGILKPMDAFKRSNRGRGYGGRQAGT
YRVKEEGDMQKLKMGDQIICKVLSGSRISEPDLTALGQDLGIIESGMVISIPATKIPRVI
GKKGSMIALLKSLLHSKVFVAQNGRIWIKGKTFEHERLLIDAIHKIEREAHTSGLTDRIK
YYITEEKKKRGIE
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaccagaaaacacaactccgactacctctcgtgagattgtaacccccggaatg
actttgtcaactgatccgagtttaatacctggacggggagcaatacgcactgaagccggt
gaaattatttcactatttgtcggatttaaggaaacccgaggtaaatatatgaatgtggtg
cccttaaatggattgtataatccacaaatgggcgataaagttatcgctcgtgtaatagga
aaaacacctgtaaaattcttgatggatattaactcaaaatatcttggaattttaaagcct
atggatgcttttaaacggagcaatcgtgggcgaggttacggcggcagacaagctggaact
tacagggtaaaggaagaaggagatatgcagaaattgaagatgggtgatcaaataatttgt
aaagtcctctcaggctctcgcatttctgaaccagatctaaccgctctcggccaagatttg
ggaattatcgaatcagggatggtaattagcattcctgcaaccaaaatcccccgagtgatc
ggaaagaaaggtagtatgattgctttactaaaaagtttattacatagtaaagtattcgtc
gcccaaaatggaaggatttggattaaaggtaagacttttgaacatgaacgtttattaatt
gatgcgattcataaaatcgaacgggaagctcacacatcgggattaaccgatcgaataaaa
tattatattactgaagaaaagaaaaaacgaggtattgaataa
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