Candidatus Lokiarchaeum ossiferum: NEF87_002614
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Entry
NEF87_002614 CDS
T09593
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03420
Nucleotide excision repair
lob03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NEF87_002614
03430 Mismatch repair
NEF87_002614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lob03400
]
NEF87_002614
Enzymes [BR:
lob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NEF87_002614
DNA repair and recombination proteins [BR:
lob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NEF87_002614
MMR (mismatch excision repair)
Other MMR factors
NEF87_002614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
ResIII
DEAD
Helicase_RecD
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
UYP46329
LinkDB
All DBs
Position
3094026..3096062
Genome browser
AA seq
678 aa
AA seq
DB search
MGKKKIVLRKKENKIPERYKKELNEEQYKVVTHENGPALVIAGAGSGKTRALTYRVALLI
EKNEDPASIVLVTFTKKAAKEMTSRVESLVGSKARGINAGTFHHLANRTLRKYAQTIGFS
NNFTILDKTDQITLMKLILAQFPKSESEKRTRFPKAQQLLEIQSKRIDLTITLKHVIKEY
FPQYADLTDPIRKILDRFVSRKKETNLMDFDDLMVYFLVFLEKDEASKSFKKRISHVLVD
EYQDVNSIQARIVDKLAEYAHSLIVVGDDAQAIYKFRGGDFTHMLNFPNNHPTALQYKLE
TNYRSNPEILSLANISIGHNQNQFKKNLKTSRPSDEKPMMVPCADLEQEAELICQQILEY
RDQGIPLNEQAILFRSTYNSLNIEQKLVQENIPYEMRAGMRFFERAHIKDLLAFLSVIVN
PADQVQWMRILSLHEKISSVSAQKILNIFSPNSNQLEQFCFYDLVSKLKGKRIQKIGIHS
LIKLQNFYKKLIMDIPKRCLLPTEQFASIPQIIAKIIKYLTPIIKENYKKNFEDRLRDLE
ELMGFASKYSDITSLLGDILTQFDIQGETIKEGDIVEEEKPLILSTIHSSKGLEWKIVYM
INLAEGRMPSSRAIGNSQSMEEERRLFYVGCTRAKDVLMLTYPRFLPYRSFDSISGPSRF
LTEIQSAEVFDEIELEEE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaaaaaatagttcttagaaaaaaagagaacaagattcctgaacgttataaa
aaagaattgaatgaggaacaatataaagtagtaactcatgaaaatggccctgcattggta
atagctggagcaggatcagggaaaacccgagcattaacctatagagttgcacttttaatt
gaaaaaaacgaggatcctgcctccattgtattagtaaccttcactaaaaaagctgccaag
gaaatgacaagtcgggttgaatcacttgttggatccaaagcgcgtggtataaatgcaggc
acttttcatcatttagcaaatcgaacattacgtaaatatgcacaaactattggtttttct
aataattttacgattttggataaaactgatcaaattaccttaatgaaactaatattagcg
caattccccaaatcagaatctgaaaagcgaactcgatttccaaaagctcaacagctccta
gaaatccagtcaaaaagaattgatcttaccataacactgaaacatgtgataaaggaatat
ttcccacaatatgcagatctaactgatcccattaggaaaattttagatcgctttgtttcc
agaaaaaaagaaactaatctcatggattttgatgatctcatggtctatttcttagttttt
ttggaaaaagatgaagcttcgaaaagctttaaaaaaagaattagtcatgtattggttgat
gagtatcaagatgtaaattcaatccaagcaagaattgtggataaactcgctgaatatgct
catagtttaattgtagtcggggatgacgcacaagcgatctataagtttcgaggtggagat
tttactcacatgttaaactttccaaataatcatcccacagcattacagtataaattagag
acaaattatcgctcaaatcctgagattcttagtttagcaaatatttccattggacataat
cagaatcaatttaaaaaaaatctaaaaacatcacgtccttcagatgaaaaaccgatgatg
gtcccgtgtgcagatctggaacaagaagcggaattaatttgccaacaaattctcgaatat
cgagatcaagggattcccttgaatgaacaggcaattctttttagatcaacatataactct
ctaaatattgaacagaaactggttcaggaaaacatcccctatgaaatgcgagccggaatg
cgattttttgaacgggcacacattaaagatttactggcatttctcagtgtgattgtaaat
cctgcggatcaagtgcaatggatgcgaatccttagtttacatgaaaaaattagcagtgtg
agtgcccaaaaaatattaaacatcttttccccgaattccaatcaactagaacaattttgc
ttttatgatttggtctcgaagctaaaaggtaagcgcattcaaaaaatagggattcatagc
ttgattaaattacaaaatttttataaaaaacttattatggacattcctaaaaggtgtctc
ctccccacggagcaatttgcatctatcccacaaataatcgcgaaaatcataaaatatctc
acccctataattaaagaaaattataagaaaaattttgaagatcgattgcgggatctggaa
gagttgatgggttttgcatcaaaatattccgatataacatcactacttggagatattctg
acccaatttgacattcaaggcgagactataaaagaaggagatatcgttgaagaagaaaaa
cccttaattctatctactattcattcatccaaagggttggaatggaaaattgtgtatatg
atcaatttggccgaaggacggatgcctagttcaagggccattgggaattcgcaatcgatg
gaagaagaacgtcgattattttacgttggttgtacccgtgcgaaagatgtattaatgcta
acttatcctaggtttttaccatatcgatcatttgattcaattagtggtccttcgcgattt
ctgacggaaattcaatcagcagaagtttttgatgaaatcgaattagaagaagaatga
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