Candidatus Lokiarchaeum ossiferum: NEF87_002666
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Entry
NEF87_002666 CDS
T09593
Name
(GenBank) Replication factor A
KO
K07466
replication factor A1
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03030
DNA replication
lob03420
Nucleotide excision repair
lob03430
Mismatch repair
lob03440
Homologous recombination
lob03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NEF87_002666
03420 Nucleotide excision repair
NEF87_002666
03430 Mismatch repair
NEF87_002666
03440 Homologous recombination
NEF87_002666
03460 Fanconi anemia pathway
NEF87_002666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lob03000
]
NEF87_002666
03032 DNA replication proteins [BR:
lob03032
]
NEF87_002666
03400 DNA repair and recombination proteins [BR:
lob03400
]
NEF87_002666
Transcription factors [BR:
lob03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
NEF87_002666
DNA replication proteins [BR:
lob03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
NEF87_002666
DNA repair and recombination proteins [BR:
lob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
NEF87_002666
MMR (mismatch excision repair)
NEF87_002666
DSBR (double strand breaks repair)
HR (homologous recombination)
NEF87_002666
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
Rep_fac-A_C
REPA_OB_2
OB_MEIOB_N
POT1PC
DUF3127
DUF5088
DUF2240
A1_Propeptide
Motif
Other DBs
NCBI-ProteinID:
UYP46381
LinkDB
All DBs
Position
3146509..3148248
Genome browser
AA seq
579 aa
AA seq
DB search
MDFEETIQKIIEKTGRARNDIKKLIQEQIEELSGLIDEEGAIVIVAKNLGIDLKSNQEAA
NMEVDQKIIDLKPRMNANTVGRIVEIEDIRKFNKKDGSQGVLLPFIIEDTSNMIRCLAWG
ENHAQILQENGFSSGEIVRIVNGFIKEGRTGALEIHIGGKSRIQLQPDNVDYKLIPDGKN
SSKISITPLGKISIKMPYVNIQGIVSSIFPPKEFSRKDGSKGKRASIAISENENSVYITF
WGDHCEKINDIVEGHTVQITRLTPKPNYKDNSKIDLTATSNTTIIIQNGGNINHSSAKPN
AQPGQIITIQELNTKGGFGSIEGKIQDIDDIKTINLRDGSQKNILKFVLADKTDAIRVNV
WGEKIPETPLKVGDVLSIESLMAKINSYSNQMEATLTRNGVITQIDKIIETNKTIAPIAS
KNAFQKLDRKNIEDITEPEFYEFKGSIIKEINRITTYSACSTCNRKYENCKCDNPGDQVN
RMIINLLLDDESSTIRATLMGERAEKFIGEKTDRIVELQEGGELESFLKERNKSLVGKEF
VFRGKARFSNYSESYEISINSFEELNVEMEASRILSLLE
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaagaaacaattcagaaaattattgaaaaaacaggtcgcgctcgaaatgac
ataaagaaattaatccaagaacaaattgaagaattaagtggattaattgatgaagaggga
gcaattgtaatcgtcgcaaaaaatttaggaatcgatttaaaatcaaatcaagaagcagcg
aatatggaagttgatcaaaaaattattgatttaaaaccacgaatgaatgcaaacactgtg
ggaagaattgttgaaattgaagacattcgtaaatttaataaaaaagatggaagtcaaggt
gttttgttaccttttattattgaagatacttccaacatgatccggtgcctggcatgggga
gaaaatcatgcccagattttacaagaaaatggattttcttcgggcgaaatagtgagaata
gtaaatgggtttattaaagagggaagaactggtgctcttgaaattcatatcggcggaaaa
agcagaattcaacttcaaccagacaatgtagattataaattgattcctgatgggaagaat
tcatccaaaatttctataacccctcttggaaaaatttccataaaaatgccttatgtaaat
attcaaggaattgtaagttcgatatttccgccgaaagaattctcacgaaaggatggaagc
aaaggaaaacgtgcttcaattgctatatcagaaaatgagaatagtgtttacataaccttc
tggggagatcattgtgagaaaattaatgatattgtcgaaggtcatacagttcagatcact
agacttactccgaaaccaaattataaagataattcaaaaatagatctgacagcaacctcg
aatactactattataatccaaaatggaggtaatattaatcattcttcagctaagcctaat
gcccaaccaggccagatcattactattcaagaattaaatactaaaggaggctttggatct
atcgaaggaaaaattcaagatattgatgatattaaaaccattaatctacgtgatggatct
caaaaaaatattttaaaatttgttttagcagataaaactgatgcaataagggtcaatgtg
tggggtgaaaaaattcccgaaacacctctcaaagttggagatgtcttgagtattgaaagt
cttatggcaaaaattaattcctattcaaatcaaatggaagcgactcttactcgaaacgga
gtaattactcaaatagataaaattattgagactaataagaccattgcgccaattgcttca
aaaaatgcttttcaaaaacttgatcggaagaatattgaagatataacagaaccggaattt
tatgaattcaaaggatcaataataaaggaaattaatcggatcacgacatattcagcctgt
tcaacgtgtaatcggaaatatgaaaactgtaaatgtgataatccaggagatcaggttaat
agaatgataataaatttgcttctggatgatgaaagtagcacaattcgagcaacattaatg
ggagaacgtgctgaaaagttcattggagaaaagacagatcgaattgtggaactccaagaa
ggaggggaattagaatccttcttaaaagaacgaaataaaagtttagtgggcaaagaattt
gtctttcggggaaaagcaagattttccaattattctgaaagttatgaaataagcatcaat
tcttttgaagaattaaatgtcgaaatggaagcatctagaattcttagcttgttggaatga
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