Candidatus Lokiarchaeum ossiferum: NEF87_003370
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Entry
NEF87_003370 CDS
T09593
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF87_003370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_003370
03009 Ribosome biogenesis [BR:
lob03009
]
NEF87_003370
Enzymes [BR:
lob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEF87_003370
Messenger RNA biogenesis [BR:
lob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEF87_003370
Ribosome biogenesis [BR:
lob03009
]
Prokaryotic type
rRNA helicases
NEF87_003370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYP47085
LinkDB
All DBs
Position
complement(3984353..3985681)
Genome browser
AA seq
442 aa
AA seq
DB search
MKFQEMNLNHSLLHGLKQMGMETATEIQERAIPEIIDSPDTHIIAQARTGSGKTLAFAIP
LVEKIDNTLQTVQSVIIVPTRELCKQVAEVFVKLTKYRHIKVVQVYGGVSIDRQVQEIQE
GAQIIVATPGRLIDLFNRHRVSFTDVKFVVLDEADRCLDMGFMPDIEFLLLDAMRDVHPR
LILFSATMLDAVYDLTKRFTGDKNVIEIDVSQDSMTVENCNQYYYLIDDFKDKYYHFIRI
IRQEKPIHCMIFVNTKRTGDWLYQRFQNEERLPLKPELISGNLTQRRREIVLDKFRKRKI
NCLIATDVAARGLDVEKVSHVFNYDIPEFEENYVHRIGRTARISNASGKVAKGIAISLVM
NDQMRTLSRIEGFMSKDIEKRPLPQRRQYSSSNRQSSGSHSERHLNTDHPARRNRNNPKR
TYKKSGPKKNDRKKPDRRNFLY
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttcaagaaatgaatttaaaccactccctattacatggattgaaacagatggga
atggaaacagccacagaaatccaagaacgagcaattccagagataatagattccccagat
acgcatatcattgctcaagcgcgcacgggatcaggaaaaacactcgctttcgcgatccca
ctagtagaaaaaattgataatactttgcaaacagttcaaagtgttataatcgtcccaacc
cgagaattatgcaaacaagttgcagaggtttttgtaaaactcacaaaatatcgccacatt
aaagtggttcaagtctatggaggagtatcaattgatcgacaagtccaagaaattcaggaa
ggggctcaaatcattgttgcgacccccggacgtttaattgatctttttaatcgacatcga
gtatcttttacggatgtgaaatttgtagttcttgatgaagccgatcgttgtttggatatg
ggatttatgcccgatattgagtttttattattggatgcaatgagagatgttcatcctcga
ttaatcttgttttctgcaacgatgttagatgcagtatatgatttaactaaacggttcact
ggagataaaaatgtaattgaaattgatgtctcacaagattcaatgacagtagaaaactgt
aaccaatactattatttaatcgatgatttcaaggataaatattaccatttcatccgaatc
attcgtcaagaaaagccaattcactgtatgatatttgttaacacaaaaagaacaggagat
tggctatatcaacgttttcaaaatgaagaaagattaccacttaaaccggaattaatttca
ggaaatttaactcaacgaagaagagaaatcgttttagataaatttcgaaaacgcaaaatt
aattgcctaattgcaaccgatgtagcagctcgaggattagatgtagaaaaagtcagtcat
gtgtttaattatgatattccagaatttgaagagaactatgtccaccgtattggtagaacc
gctcgaatatcgaatgcatcaggtaaagttgcaaaaggaatcgcaatttcattagttatg
aatgatcaaatgcgtactttatctagaattgagggattcatgagtaaagatattgaaaaa
cggcctttacctcaacgaagacaatactcttcgtcaaatagacaatcttcgggatctcac
tcagagaggcatcttaacaccgaccatccagcccgtagaaatcgtaacaatccaaaacgt
acctataaaaaatcaggtccaaagaaaaatgatcgaaaaaaacccgatcgacgcaatttc
ttgtactaa
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