Candidatus Lokiarchaeum ossiferum: NEF87_003642
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Entry
NEF87_003642 CDS
T09593
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NEF87_003642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_003642
Enzymes [BR:
lob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NEF87_003642
Messenger RNA biogenesis [BR:
lob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NEF87_003642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-C2H2_4
CMS1
zf-H2C2_5
AAA_22
SLFN-g3_helicase
PRTP
ERCC3_RAD25_C
zf-C2H2
Motif
Other DBs
NCBI-ProteinID:
UYP47357
UniProt:
A0ABY6HV12
LinkDB
All DBs
Position
4265551..4266924
Genome browser
AA seq
457 aa
AA seq
DB search
MSNQTAFHNLGLNAILQRAVRESGYLKPTPIQSQTIPPLLAGRDLVGCAQTGTGKTAAFA
LPILQLLAIKMQEKSSPKSKLNSHSKKNIRVLVLSPTRELAIQIGDSFSKYGRFNKKITN
TVIFGGVKQNKQVKTLKSGVDILVATPGRLLDLIGQDIISLHHIEILVFDEADRMLDMGF
IHDVRKIMKNISGVHQTMLFSATMPKQIVQLAKDFLQNPVKVSVTPNQPTVEKIDQTVHF
VPKSEKQALLLSIVTNPKVIRALVFSRTKHGANKIVKKLIQAGVGAEPIHGNKSQNARQK
ALKNFRDGTTRILVATDVAARGIDVENISHVIQFDLPDVSETYVHRIGRTARAGAGGIAI
AFCASDERPLLRDIEKLIRMKIPDATNSRPRSKQKLNTLPQKNQSILTNSKKRVNQSYQK
NQLKSVKPPFKCPQCSRLFSSKAGVSQHIKAKHNPLS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcaaacagcatttcacaatttaggattaaatgccattttacaacgtgcagtt
cgagaatctggatacttaaaaccgactccgattcaatcccaaacaattccgccactttta
gcggggagagatctcgtaggttgtgcacaaacaggtacggggaagacggccgcatttgcc
cttccaattttacaattattagcaattaagatgcaagaaaaatcttctccaaaatccaaa
ctcaattcacactcgaaaaagaacattcgtgtcttagttttatcaccaacccgggaatta
gctattcaaattggtgactcattcagcaagtacggccgattcaataaaaaaatcactaac
accgtaattttcggcggtgttaagcagaataaacaagttaaaactcttaaatctggagtt
gatattcttgttgctacacccggacgccttttggatttaattgggcaagatataatttcc
cttcatcatattgaaatattagttttcgatgaagcagatcgtatgttggatatgggcttt
attcatgatgttcgaaagatcatgaaaaatatttctggtgtgcaccaaaccatgttattt
tctgctacaatgccaaagcaaatagttcaattagcaaaggactttcttcaaaacccagta
aaggtctcggtgaccccaaatcaaccgactgtcgaaaaaattgatcaaactgttcatttt
gtgccaaaaagcgaaaagcaagcattacttttatccatcgtaaccaatccgaaagtgatc
cgagctctggttttttcccgaacaaagcacggtgcgaataaaattgtaaagaaactaata
caagcaggagtaggagcagagccaatccatggaaataaatcacaaaatgctcggcaaaaa
gccttgaaaaattttcgagatgggacaacacgaatacttgtcgcgactgatgtcgctgca
cgtgggattgatgttgaaaatatttctcatgtaatacaatttgacttaccggatgtttcc
gaaacatatgttcatcgcatcggaaggactgctcgcgcaggagcaggcggtattgcgatt
gctttttgtgcttctgatgagcgtcccttactccgtgatatcgaaaaattaattcgaatg
aaaatccccgatgccacgaattcgagaccaagaagtaaacaaaagttgaacacactacca
caaaaaaatcaatccatacttaccaactcaaaaaaaagagtaaatcaatcataccagaag
aaccaattaaaatcagtaaaacctccgtttaagtgcccacaatgttctcggttattcagt
tctaaagctggtgtctctcagcatatcaaagctaagcataatcccctttcttag
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