Candidatus Lokiarchaeum ossiferum: NEF87_004010
Help
Entry
NEF87_004010 CDS
T09593
Name
(GenBank) VCP-like ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NEF87_004010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_004010
03009 Ribosome biogenesis [BR:
lob03009
]
NEF87_004010
04131 Membrane trafficking [BR:
lob04131
]
NEF87_004010
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lob04147
]
NEF87_004010
Messenger RNA biogenesis [BR:
lob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NEF87_004010
Ribosome biogenesis [BR:
lob03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NEF87_004010
Membrane trafficking [BR:
lob04131
]
SNARE
SNARE associated proteins
Others
NEF87_004010
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NEF87_004010
Exosome [BR:
lob04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NEF87_004010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_14
AAA_5
CDC48_2
TIP49
AAA_33
AAA_22
NPHP3_N
nSTAND3
RNA_helicase
Sigma54_activat
ABC_tran
Mg_chelatase
AAA_28
IstB_IS21
ATPase_2
AAA_lid_PRS2_C
AAA_25
NACHT
AAA_18
AAA_17
AAA_7
Zeta_toxin
NB-ARC
Viral_helicase1
AAA_3
Rad17
DUF815
Parvo_NS1
AAA_24
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
UYP47725
LinkDB
All DBs
Position
complement(4673794..4676034)
Genome browser
AA seq
746 aa
AA seq
DB search
MSMDGEPSKNPNGFRRIKLKVQEARKRDVGRSIIRLDSATMKDLDVNTGDIIEIQGKEQS
TAAIAWPAYPQDQGLGIIRIDSRVRKNANIGIDEFVNILKVEEAIAKSVVLAPISLKIKP
NTRFESFVKRKLLNFPITKGDLIYINIGMTKEIVFRITSIKPAGISLVKQSTILSINEST
VDEIPQGIAYITYEDIGGLDREIQLVREMVELPLKHPELFKRLGIDPPKGVLLRGPPGCG
KTLLAKAVANESQAHFISINGPEIMSKFYGESEKKLRGLFKEAEEKNPSIIFIDEIDAIA
PKRENVTGEVERRVVAQLLALMDGLESRGRVVIIGATNRPNAVDPALRRPGRFDRELEIK
VPGENGRLEILQIHTRKMPLDEDVKLQEVARVSHGYVGADIASLVRETGMCALRRYLPEI
NLEDEEVDPDILDHMFVEKDDFDKAFKEIIPSGIREVFIEIPSVHWSNVGGLEYTKQQLI
ESVEWPIKNPGAYLRMGVAPPTGVLLYGPPGCGKTLLARAVATESEANFISIKGPELLSK
WVGESEKAVREVFRKAKLAAPCIIFFDELDSIAPRRGSGGTDSGVTERVISQLLTELDGL
AQAKEIILIAATNRPDILDPALMRPGRIDRLAYVPPPGPEDREAIFEIFTEGMPLDDDVK
LHELSLKTDFFTGADIESLCREAAIRALRENIRGETIHNIHFEMALEEMHPSASQEVCES
YEKFEDALRSRKIGSAGARKGRDLYT
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagcatggatggagaacctagtaaaaaccctaatggatttcgacggatcaaattgaaa
gtgcaagaagcacgcaagagagatgttggaagatctattattcgactcgatagtgcgact
atgaaagatttagacgtcaacactggtgacattatagaaattcaaggaaaagaacaatcc
accgcagcgattgcgtggccagcctatcctcaagatcaaggactaggcattatcagaatt
gatagcagagttagaaaaaatgcaaatattggcatagatgaatttgtgaacattttaaag
gtagaagaagccattgctaaatccgttgtattagctccaatatcattaaagattaaacca
aatacacgttttgagagttttgtcaaaagaaaacttttaaattttccaatcacaaaagga
gatctaatttatattaatattggaatgacgaaagaaattgttttccgaataacatcaatt
aaacctgcaggaatatctttagttaaacaatcaacaattttatcaataaatgaatcaact
gtcgatgaaatccctcaaggaatcgcctatatcacctatgaagatattggtggtttggat
agggaaattcaacttgttcgggaaatggtggaacttcctttaaaacaccctgaattattt
aaacgcttaggaattgacccgccaaaaggtgttctactacgaggtcctccaggatgtggt
aaaacattattagcaaaggcagtagctaacgagagccaagcacatttcatctcaatcaat
ggtcccgagataatgagtaaattttatggagaatcggagaaaaaattgcgtggattgttt
aaagaagcggaagagaaaaatcccagcataatatttattgatgaaattgatgcgattgca
cccaaacgggaaaatgtcacaggggaagttgaacgacgggttgttgcacaattgctggct
ttgatggacggattagaaagtcgcggaagggttgttataataggagcaacaaatcgtcca
aatgcagtagatcccgcgttaagacgtcctggtcgatttgatcgtgaattagagattaaa
gttccgggagaaaatgggagattggaaatcttacaaattcacacacgtaaaatgccatta
gacgaagatgttaagttacaagaagttgcaagagtgtctcacggatatgttggagcagat
attgcaagtttagtaagagaaacgggaatgtgtgctcttcgaagatatttgccagagatt
aatcttgaggatgaagaagtggatccagatattttagatcatatgtttgtagaaaaagac
gatttcgataaagcattcaaggaaataattccatctgggattcgagaagtttttatagaa
atacccagcgttcattggagtaatgtcggagggttggaatatactaaacaacaacttata
gaatcagtagaatggccaataaaaaacccgggagcctatttacggatgggtgttgcaccc
ccgacaggtgttttgttatatggaccacctggttgtggaaaaacactacttgcacgggca
gttgccacagaatcagaagctaatttcatttcaattaaaggacccgagttattatccaaa
tgggtgggagagagtgaaaaagcagttcgagaagtatttcgtaaagctaaactagcagca
ccttgtataattttctttgatgaattagattcaatcgcccccagacgtggaagtggaggt
accgattcaggtgtgaccgagcgagtgatttctcaattgcttacagaacttgatgggtta
gctcaagcgaaagaaataatcctcattgcagccaccaaccgcccagacatcttggatccc
gctttaatgcgaccaggaagaatagatcgactcgcctatgtaccacctccaggtccagaa
gatcgagaagcaatcttcgagatatttacagaaggaatgcctcttgacgacgatgtgaaa
cttcatgagctctctctcaaaacagatttctttactggagcagatatagaatcattatgt
cgagaagctgcaattcgtgcattacgggaaaatatccgaggagaaacaatccacaacatc
cactttgaaatggcattggaagaaatgcatccaagtgcatcgcaagaagtttgcgaatct
tacgaaaaatttgaggatgctttgagaagtcgtaaaatcggtagcgcaggtgctcgaaaa
ggacgagatttgtacacataa
DBGET
integrated database retrieval system
