Candidatus Lokiarchaeum ossiferum: NEF87_004092
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Entry
NEF87_004092 CDS
T09593
Name
(GenBank) VCP-like ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NEF87_004092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_004092
03009 Ribosome biogenesis [BR:
lob03009
]
NEF87_004092
04131 Membrane trafficking [BR:
lob04131
]
NEF87_004092
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lob04147
]
NEF87_004092
Messenger RNA biogenesis [BR:
lob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NEF87_004092
Ribosome biogenesis [BR:
lob03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NEF87_004092
Membrane trafficking [BR:
lob04131
]
SNARE
SNARE associated proteins
Others
NEF87_004092
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NEF87_004092
Exosome [BR:
lob04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NEF87_004092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_22
AAA_5
AAA_33
TIP49
AAA_14
nSTAND3
DUF815
CDC48_2
NPHP3_N
AAA_28
AAA_3
RNA_helicase
AAA_18
Mg_chelatase
IstB_IS21
Bac_DnaA
Sigma54_activat
ATPase_2
AAA_24
ABC_tran
AAA_7
AAA_17
AAA_lid_PRS2_C
Parvo_NS1
TsaE
DUF5906
SLFN-g3_helicase
Viral_helicase1
Zot
DAP3
PPV_E1_C
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
UYP47807
LinkDB
All DBs
Position
4770561..4772786
Genome browser
AA seq
741 aa
AA seq
DB search
MTDPKESPKETFVRISDSRRRDAGRGFARVDPEIQKKLKLHSGDGVMLENAVTGKKTVAL
IMHGYSEDDGTGIIRIDGSIRRNLKASIDERVLIRKIDVSPAQSIVFAPVDKHIGVRNVA
VFAEILENRIVMIGDTISFDLIGRSVHFVVKNFTPKVPAVQISRRTKIQVDRKPVEAKSL
ERTIPRTTYEDLGGVSEPIQRTREMIELPLRHPELFNRLGISPPKGLLLYGPPGTGKTLL
ARAVANETDAHFITLSGPEIMSKFYGQSEENLRKVFEEAKENAPSIIFIDEIDSIAAKRE
EVQGEVERRVVAQLLALMDGLDERGNIVVIGATNRPNSLDEALRRPGRFDREIEIGVPNK
EGRLEILQIHSRGMPLLDGVDLKYLAEKTHGFVGADLQALAKEAAMIALRRILPDLNLDE
EVIPPDILNKLTISQDDFKKSLAGIEPSALREVLISAPTETWADVGGLEHAKQQLQEAIE
WPIKFPNIHKYLKTKPAKGILLYGLPGTGKTLLAKALAHEAEANFISIKGPELISKWVGE
SEKAVRETFRKARQAAPCIIFMDEIDAIAPTRGRGESNQVTERIVSQLLTEIDGMERLHD
VVLVAATNRPDILDPALMRAGRFGKQIEIPLPDKDTRVAIFNIHLKGLPLDPDIDLNSLA
SSMEGKSGADIESFCSGAVQIAIRSYISGNNFLDLKEDELQSILIKKSHFDEAMEIVVHD
SARSERAYNKLDGSMSKDLYS
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcctaaagagagccccaaagaaacttttgtacgtattagcgattcacgtcgt
cgtgatgctggacgtggttttgcgcgtgttgatcccgaaattcaaaaaaaattgaaactt
cactctggagatggtgttatgttagaaaatgctgtcacagggaagaaaaccgtggctctt
atcatgcacgggtactctgaagatgatggtaccggaataattcggattgatggatcaatc
cgtcgaaatttgaaggcttctattgatgagcgcgttcttatccgcaaaattgacgtctct
cctgcacaatcaatagtttttgctcctgttgataagcatattggcgtgcgaaatgtggcg
gtatttgctgaaattttagaaaataggattgtaatgattggagacacgatcagttttgat
ttgattgggcgttcagttcattttgttgtgaaaaattttactcccaaagttccagcggtt
caaatctcccgaagaactaaaattcaggtggatcgaaaacctgttgaagcaaaatcgtta
gagcgtacaattcctaggaccacttacgaagatttaggtggtgtatccgaacccattcag
cgaacgagagaaatgattgaattacctcttcgtcatcctgaattattcaaccgtttaggc
atttcacctcctaaaggattattattatacggacctcctggaacagggaaaacattatta
gctcgtgcagtggccaacgaaactgatgcgcattttataacattgagtgggccagaaata
atgtctaaattttatgggcaatcggaagaaaacttaaggaaagtgtttgaagaagctaaa
gaaaatgctccttcgataatatttatagatgaaattgattcaattgctgccaaacgagaa
gaagtgcaaggtgaagttgagcggcgtgttgttgcacaattacttgctctaatggatggg
cttgatgaaaggggtaatattgttgttattggtgccacaaaccgtcccaacagtctcgat
gaggcgctacgccgacccgggagatttgatagggaaattgaaattggagttccgaataaa
gagggtcgtttggaaattcttcagatacattctcgagggatgccattattggatggagtt
gatttaaaataccttgcggaaaaaacacatggttttgttggtgccgatctgcaagctttg
gcaaaagaagctgcgatgatcgccctacgtcgtattttacctgatttaaacttagatgaa
gaagttatacccccagatattctaaacaaattaaccatttctcaagatgatttcaaaaaa
tctttggctggaattgaaccttcagccttacgtgaagttttaattagtgctcctactgaa
acatgggctgatgttggggggttagagcatgctaaacagcaattgcaagaagcaattgaa
tggcctataaaatttcctaatattcataaatatcttaaaactaaacctgctaaaggaatt
cttttgtatggcttgcctggaactggaaaaaccttgctcgcaaaagctctagcccatgaa
gccgaagcaaattttatttccattaaaggtccagaacttatttccaaatgggttggggaa
agtgagaaagctgtccgagaaactttcagaaaagcacgccaagccgcaccttgcattatt
ttcatggatgagatcgatgcaattgctcctacacgtggccgtggagaaagcaatcaagtc
acggaacggattgtatcacaacttctaactgaaattgatggtatggagcgattacacgat
gtcgttttagtggcagccactaatcgtcctgatattttggatcccgctttaatgagggct
gggagatttggaaaacaaattgaaatcccattgcccgataaagatacgcgtgttgcaatc
ttcaatatacatcttaaaggattacctcttgatcctgatattgatctcaattcacttgct
tcatcgatggaaggaaaatcgggagctgatattgaatcattttgctctggagctgtacaa
attgcaattcgatcttatatttcagggaataattttctggatttgaaggaagacgaatta
caatccatccttatcaaaaaatctcactttgatgaagcaatggagattgttgtgcatgat
tctgcacgatctgaacgcgcttacaacaaattggatggatcaatgtccaaagatttatac
agttaa
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