Candidatus Lokiarchaeum ossiferum: NEF87_004172
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Entry
NEF87_004172 CDS
T09593
Name
(GenBank) hypothetical protein
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NEF87_004172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lob03000
]
NEF87_004172
03021 Transcription machinery [BR:
lob03021
]
NEF87_004172
Transcription factors [BR:
lob03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
NEF87_004172
Transcription machinery [BR:
lob03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
NEF87_004172
RNA polymerase III system
TFIIIB
NEF87_004172
RNA polymerase I system
SL1/TIF-1B
NEF87_004172
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
Motif
Other DBs
NCBI-ProteinID:
UYP47887
UniProt:
A0ABY6HZY3
LinkDB
All DBs
Position
complement(4880856..4881524)
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AA seq
222 aa
AA seq
DB search
MELIELPPNQIDVYPGSLEETLTDDATNFPYKIINIVCLAKMTRPDPESKINFEELEKRI
TVKRLNRFPCVLFKIDEISVILFKNGKLILTGIKKRETIEPLRLKIIDHLRNKGKLEFSE
MTTEIQNLVVMSQLGKIINLEMACLTLTNCLYEPEQFPAAIIKPTTGGTFLIFSNSKIIG
LGMKSMDMVKNSLKNLISDIFENDLFIRVNDDDPFDDDQLFF
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggaacttatagaattacccccaaatcaaatcgatgtttatcctggatcattagaagaa
actttaacagacgatgcaaccaattttccatacaaaataattaatattgtgtgtttagcg
aagatgacgcgtccagatcctgaatctaaaataaatttcgaagaactagaaaagcggatt
actgtcaaaagactgaatagatttccatgcgttttattcaaaattgatgaaatttcagtt
attttatttaaaaatggtaaattaattttaacaggtattaaaaaaagagaaactattgag
cctttacgattaaaaataatcgatcacttgcgtaataagggtaagctcgaattttcagaa
atgacaacagagattcaaaatctggtagtaatgtcccaattaggaaaaataattaattta
gaaatggcttgtttaactttaacaaattgcttatatgaacctgaacaatttccagcagca
attatcaaaccaacgacaggcgggacatttttaatcttttctaatagtaaaatcattgga
ttgggtatgaaatcaatggatatggttaaaaactcgttaaaaaatcttatttcagatatt
tttgagaatgatctttttattcgcgttaatgatgatgatccatttgatgatgatcaactc
tttttttag
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