KEGG   Candidatus Lokiarchaeum ossiferum: NEF87_004610
Entry
NEF87_004610      CDS       T09593                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
lob  Candidatus Lokiarchaeum ossiferum
Pathway
lob03030  DNA replication
lob03410  Base excision repair
lob03420  Nucleotide excision repair
lob03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lob00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NEF87_004610
   03410 Base excision repair
    NEF87_004610
   03420 Nucleotide excision repair
    NEF87_004610
   03430 Mismatch repair
    NEF87_004610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lob03032]
    NEF87_004610
   03400 DNA repair and recombination proteins [BR:lob03400]
    NEF87_004610
Enzymes [BR:lob01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NEF87_004610
    6.5.1.6  DNA ligase (ATP or NAD+)
     NEF87_004610
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     NEF87_004610
DNA replication proteins [BR:lob03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    NEF87_004610
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     NEF87_004610
DNA repair and recombination proteins [BR:lob03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     NEF87_004610
   NER (nucleotide excision repair)
    Other NER factors
     NEF87_004610
   MMR (mismatch excision repair)
    Other MMR factors
     NEF87_004610
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PWI_CCDC43
Other DBs
NCBI-ProteinID: UYP48325
UniProt: A0ABY6HXR7
LinkDB
Position
5418111..5419934
AA seq 607 aa
MDFNTVVQYYERIGATKKRLEIIDILAQLFQECRTTDDGEDFPKIIYLTQGRLVSEITEW
PKFGVAEKMIIQAMVKLTSSESSQIKKAINKTGDVGEVVQNILKKERSKRVKYSLDSAFK
TGETKKKKTFQIEALYKDLEKLSLLKGDGSQENKIDLINGILRRCTPQSAKYVVNIILSN
LRIGLADMTIMDSLAIVFLGDKSKRHLIEKVYNIFPDLGFIVKKLLDKGEKGLQEIGIQV
GVPIRMMLASRIQYPQIQAKLGGGDFIAEYKYDGERVQVHKHGNEVKLFSRHLKDISLQY
PDVIRAVRDEIKAYEVIFEGEIVAMDPFFEKMLPFQVVSTRRRKYDIEKMIKEVPVSLFC
FDILYFRPDETHSIEKSTTMFLPLMERRKMLESLFTPSDHLQLSQMKMIHSSEMMVDYFN
EARAKGAEGIMNKKIGEDAIYKAGNRGFLWIKLKGLEGAKMVDTIDVVIIGGSWGKGRRK
GILSPLFGAVYNSDSNKFEFLTRIGSGFTDDDLIQFTEQLREFEVPKCPKNVICSDVPDM
WVDPKLIIEVMGDELTISNKADAGATPTNSSGYGLRFPVYQRTRNDKDIYQITTTAEIIS
FYEMQNG
NT seq 1824 nt   +upstreamnt  +downstreamnt
atggattttaataccgtagtccagtattatgaacggattggagccaccaaaaagcggttg
gaaattattgatatccttgctcagttatttcaagaatgccgaactactgatgatggggag
gattttccaaagataatttatttaacccaagggcgattagtgtcagagattaccgaatgg
ccaaaatttggagtggcagagaagatgattattcaagccatggtcaaactaaccagttcc
gagtcttcccaaatcaaaaaagcaattaataaaacgggtgatgttggtgaagttgttcaa
aacatcttgaaaaaggaaaggagtaaaagggttaaatattctctagattctgcttttaaa
accggagaaactaaaaaaaagaaaacatttcaaattgaagctttgtacaaagatcttgaa
aaactctcattattgaaaggggatgggagtcaagaaaataaaatagatcttattaatggc
atattacgaagatgcactcctcaaagtgcgaagtatgttgtaaatataattctttccaat
cttcgaattggacttgcagatatgacgatcatggattcccttgcaattgtgtttttaggt
gataaaagtaaacggcatctaattgaaaaagtatacaatatatttccagacttaggattt
attgttaagaaattattggataaaggagaaaaagggttgcaagaaattggaattcaagtt
ggtgttccaattagaatgatgttggcttcacgaattcaatatccacaaattcaagccaaa
cttggtggtggtgatttcattgctgaatataagtacgatggggaacgagttcaagtgcat
aagcatggcaatgaagtgaagttattttcccggcaccttaaagatatctctctccaatac
cctgatgttattcgagctgttagggatgaaattaaagcctacgaggtcatttttgaaggt
gaaattgtggctatggatccattttttgaaaaaatgctaccatttcaggttgttagtaca
cgtagaagaaagtacgatattgagaaaatgataaaagaagttcccgtttctcttttttgc
tttgatatactctattttcgccctgatgaaactcattcaattgaaaaatccactactatg
ttccttccgttaatggaacggagaaaaatgcttgaatccctatttactccctctgatcat
cttcagttatcccaaatgaaaatgattcattcgtccgaaatgatggtggactatttcaat
gaagctcgtgcaaaaggagctgaaggtattatgaataaaaaaataggagaagatgcaatt
tataaagcagggaatcgtggtttcttatggatcaagttgaagggattagaaggtgcaaaa
atggtggatactattgatgttgtaattattggaggttcatggggaaaaggaaggcggaaa
ggtattttaagtcctttatttggggcagtatataattccgattctaataaatttgaattc
ctaacacgtattgggtctgggtttacagatgacgatttgatccaatttacggaacagttg
cgggaatttgaagttccgaaatgtccaaaaaatgtgatatgttctgatgttccagacatg
tgggtagatccaaaattgataattgaagttatgggtgatgagctcacaattagtaacaag
gcggatgctggggcgactccaaccaattctagtgggtatgggcttcgatttcccgtttat
caacgcactcgtaatgataaagatatttatcagataactaccacagcagaaattatatcc
ttttatgaaatgcaaaatggatga

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