Candidatus Lokiarchaeum ossiferum: NEF87_005018
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Entry
NEF87_005018 CDS
T09593
Name
(GenBank) VCP-like ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lob
Candidatus Lokiarchaeum ossiferum
Pathway
lob04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NEF87_005018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lob03019
]
NEF87_005018
03009 Ribosome biogenesis [BR:
lob03009
]
NEF87_005018
04131 Membrane trafficking [BR:
lob04131
]
NEF87_005018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lob04147
]
NEF87_005018
Messenger RNA biogenesis [BR:
lob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NEF87_005018
Ribosome biogenesis [BR:
lob03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NEF87_005018
Membrane trafficking [BR:
lob04131
]
SNARE
SNARE associated proteins
Others
NEF87_005018
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NEF87_005018
Exosome [BR:
lob04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NEF87_005018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_2
TIP49
AAA_5
AAA_14
AAA_lid_PRS2_C
CDC48_2
AAA_22
AAA_33
RNA_helicase
AAA_28
nSTAND3
IstB_IS21
NPHP3_N
Sigma54_activat
Mg_chelatase
ATPase
AAA_18
AAA_7
ABC_tran
AAA_17
DUF815
Parvo_NS1
NACHT
TsaE
Bac_DnaA
AAA_24
AAA_3
NB-ARC
AAA_11
ATPase_2
SLFN-g3_helicase
AAA_30
Zot
ResIII
Motif
Other DBs
NCBI-ProteinID:
UYP48733
LinkDB
All DBs
Position
complement(5920288..5922591)
Genome browser
AA seq
767 aa
AA seq
DB search
MAPTDDNRIIKTLRVAEIAKASAGRFMCRMDTSVIKEMELKPGEIVEIIGKKNTAAILFP
TSTSETEIILLDGLTRRNAGIGIGEYVKIRKCNYSIANKVVLSLIQSDLKLSSSIKQIKL
NLLNKPVQAGDIINVSGSNLAKKEQGNGPYKELKEMMPFLKTPTVSIGEVRFAVVETKPK
GIVQIQNSTAIEIREGFVATNSMGDITTYDDIGGLGEVIHRIREMVELPLKHPELFQRVN
IDPPKGVLLHGPPGTGKTLMARAVSQEANATFITINGPEIMSKFYGASEERLRNIFKEAE
EKAPSIIFIDEIDSIAPKRENVSGEVERRVVAQLLSLLDGLKGRGRIIVIGATNRVNSID
EALRRPGRFDREIELSVPDADGRKEILQIHTRGMPLATDVELKEYARLSHGFVGADLMAV
AREAAMSSLRKILPKIDLDKPIPTEILDSLQITDDDFQNALRMVEPSAMREVLVEVPNVK
WDDIGGLESVKQELKESIDWPLKYPHLYKKAGIRSVNGVLLYGPPGCGKTLLAKAVATES
EINFLTVKGPEIFSKFVGESEKAVREIFRKARLSAPSIIYFDEIDAIAANRGGGMGASSG
SNVGMQVVNQILVEMDGVEDRKGVVIVASTNRPDILDPALLRPGRFDRLVYVPAPEVEGR
KKILDVHTKDMPLAENAKAKLDSIAENTMGYSGADLENVVREAGMQAIREKLEDFEMIDL
AHLEYALKKIQASLTPDLIAKYNEISEKLSNQKIRAAAPFKEPGLFS
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcaccaacagacgacaatagaatcattaaaacattacgtgttgcggaaatagcaaaa
gcttcagcaggcagatttatgtgccgaatggatacaagcgtaataaaagaaatggaatta
aaacctggcgaaatcgtagagatcatcggaaaaaagaataccgctgccattctattccca
acttcaacctcagaaacggagattatattattagacggattaactcggaggaatgcggga
attggaattggagaatatgtaaaaattcgcaaatgtaattattcgatcgccaataaggta
gtacttagtttaattcaatcagatttaaagctctcatcgagcattaagcaaatcaaacta
aaccttttgaataaaccagtacaagcaggagatattataaacgtatcaggctctaattta
gcgaaaaaggaacaaggaaatggcccctataaagaattaaaagaaatgatgccattcttg
aaaacaccaactgtgtccataggggaagttagatttgcagttgtggagactaaacctaag
ggcatagttcaaattcagaattccacagccattgaaattcgggaaggttttgtggcgact
aattccatgggagatattacgacttatgatgatataggtggattaggagaagtaatacac
cgcattcgggaaatggtagaattacctttgaaacatcccgaattatttcaacgcgttaat
atagatcctccaaaaggagtgttgctccacggaccaccgggaacaggaaaaacgttgatg
gcgcgtgcagtttctcaagaagcgaatgcaacttttataaccattaatggtccggaaatt
atgagtaagttttatggtgcatctgaagaacggttgcgaaatatcttcaaagaagcagaa
gaaaaagccccttcaattatatttattgatgaaatcgactctattgcgccaaaacgagaa
aatgtatctggtgaagtagagcgtcgtgtagttgcccaattgttaagtttattagatgga
ttaaaaggaagaggacgtatcattgtgataggcgctacaaatcgtgttaattcaattgat
gaagcactacgacgtcctgggagatttgatcgggagatagaactctcggttcctgacgca
gatggtcgaaaagaaatattgcaaatccacaccagaggcatgcccttagcaactgatgta
gagttaaaagaatatgcaaggctttcccacggatttgtaggtgcagatttaatggccgtt
gcaagggaagcagcgatgtcttcacttcgaaaaatacttccgaaaatcgatttagataaa
ccaatcccaactgaaattctcgattcgttacaaatcactgatgatgattttcaaaacgcc
cttcgaatggtagaaccaagtgcgatgcgagaagttttagttgaggtacccaatgtgaag
tgggatgatattggaggcttagaatctgttaaacaagaattgaaagaaagtatagattgg
cctctaaaatatccgcatctctataaaaaagcaggtattagatctgtaaatggggtactt
ctttatggcccacctggttgtggtaagacattattggcaaaagctgttgctacagaatca
gaaatcaatttcttaacagtaaaaggtccagaaatcttttcaaaatttgtaggagaaagc
gaaaaagcagttcgtgaaattttccgcaaagctcgcttatccgcaccatctattatatat
tttgatgaaatagatgccatagcagccaaccgaggaggtggaatgggtgcatcttcaggt
tccaatgtggggatgcaagtagttaaccaaatattagttgaaatggatggagtagaagat
aggaagggtgttgtgattgttgcaagcactaatcgtcccgatattctagatcctgcatta
ttacgaccaggtcgatttgatcgattggtttatgttccagccccagaagtagagggacgt
aagaaaattttagatgtgcataccaaagatatgccattggcagaaaatgctaaagccaaa
cttgattctattgctgaaaatacaatgggatacagtggtgcagatttagaaaatgttgtg
cgagaagcagggatgcaagccattcgagaaaaattagaggattttgaaatgatagattta
gcacaccttgaatatgcactcaagaaaattcaagcatctcttacaccggatttaattgca
aaatacaacgaaatttcagaaaaactctcaaatcaaaagatacgagcagcagcaccattc
aaagaaccgggactcttttcttaa
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