Lepisosteus oculatus (spotted gar): 102682229
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Entry
102682229 CDS
T07349
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04010
MAPK signaling pathway
loc04020
Calcium signaling pathway
loc04144
Endocytosis
loc04510
Focal adhesion
loc04540
Gap junction
loc04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102682229 (pdgfra)
04020 Calcium signaling pathway
102682229 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
102682229 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
102682229 (pdgfra)
04540 Gap junction
102682229 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
102682229 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
loc01001
]
102682229 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
loc04090
]
102682229 (pdgfra)
Enzymes [BR:
loc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
102682229 (pdgfra)
Protein kinases [BR:
loc01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
102682229 (pdgfra)
CD molecules [BR:
loc04090
]
Proteins
102682229 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
Ig_2
ig
V-set
VEGFR-1-like_Ig-like
VEGFR1-3_N_Ig-like
Ig_CD22
Receptor_2B4
Herpes_gI
ChapFlgA_N
Motif
Other DBs
NCBI-GeneID:
102682229
NCBI-ProteinID:
XP_015201394
LinkDB
All DBs
Position
LG4:73043707..73067059
Genome browser
AA seq
1479 aa
AA seq
DB search
MDVFLQMKMRLALRVMLVGILSGLQTTVCEKAKPVIASAEEELVIPLHSMVSLNCTGEGG
VLWEGPLSRGGAVASGQSFSTLLLLDASASNTGFYTCAFKAHGTAEGAELGEANIYIYVP
DPAFPFVPEDAPRQHVQADPPAAVIPCRTSSPSSLVSLKEVETGAEVPSLYDSKRGFIGS
FASGTYVCETTEAGVRHYSALYRVGDDKSSSDFHIEMESSEAAVEAGAPFSITCVAPLGD
EFEQHWLHPVKQAGKAVQLKERVKDTVRYTLKIPQASVLDSGVYECSVTNILTQETKIKK
ATISVHEKGFISLEPLFGRIEFANMNEDKEFTVNINAHPSPKVTWLKDDIEIENDNFATR
STMTKIDGVRYQSVLSLFGATQEDNGNYTIKVENENDQKSFTFSLRVKAPSIALHQQVVP
IISPSQKEMVVQLHSSFKLTCSGEREVDWDIPLDEEFYHMQFEEDNSGQFVVSISVQNAS
VFHTSSYSCYYKDANSSTTEDLEYSSIYIYVPDPEAPFVPSVSVFGTHVLAAMGEMEIPC
RVSNPNTSVILFNTDTQKTVSSSYDSKIGAIGIFPSGTYVCKTIINGEEYKSEEYIVHGW
IANSELQVDLEAPNTAVLVGDTINVTCVAKGSEILEDNWKYPGKMAGRGEITLKENKRDV
EIRYSLTIKHASLKDSGVYECSITDIMSTNMITKAVTITVYEKGFIQLDPMVSQKEFAEL
DEVKEFRVDIEAYPEPKAIWFKDGVALKEVNAETVSTLERNSETSYKSILKLIRAKEEDS
GNYTIRVYNKNETESYTFSLQVKVPAVIVDLMDLHQGSASGQSVVCIAGGLPTPEVEWFI
CRNIKQCANDTSMWTVLPVNSTDITVENHLDEENRLESQVIFTKLDGTLAVKCLAKNELA
AVAREVKLVSNTLRSELTVAAAVLVLLVIVIVSLIVLVIIWKQKPRYEIRWRVIESISPD
GHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKM
LKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHK
NREHFLSRHPDKMKKDLDIFGINPADESTRSYVILSFGSQGDYMDMKQADTTQYVPMLEM
KEDSKYSDVQRSNYDHPPSHKQKALTETEVNNLLSDDNSEGLSFMDLLSFTYQVARGMEF
LASKNCVHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIF
DNLYTTLSDVWSYGILLWEIFSLGGTPYPGMVVDSSFYNKIKSGYRMAKPEHATPAIYEM
MTKCWSSEPEKRPSFHSLSEMVASLLPPEYKKSYEKVHHDFLKSDHPAVTRMRTECEDAY
IGVTYKNHDKSKDRESGFDEQRLSSDSGYIIPLPDLDPVSDEDFSKRNRHSSQTSEESAI
ETGSSSSTFVKREGETIEDIEIIDDLVMDSGDLVEDSFL
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcttcttgcagatgaagatgcgcctcgctcttcgggttatgttggtcgggatc
ttatcaggcctccagaccactgtttgcgagaaggcaaagccggtcatcgcctcggccgag
gaagagctcgtcatcccgctgcattccatggtcagcctgaactgcaccggcgaaggcggc
gtgctctgggagggcccgctgtcccgaggcggggctgtggcctccggacagtccttctcc
actttgctgctgcttgacgcttcggcgtccaacaccggcttctacacctgcgctttcaag
gcgcacggcacggcggaaggcgcggagctcggcgaggcaaacatatacatatatgtgcct
gacccagcatttccgtttgtgcctgaagacgccccccggcagcacgtccaagcagaccct
cctgctgcagtgattccgtgtcgcaccagcagccccagctctctcgtcagcctgaaggag
gtggagacaggcgcggaggtgcccagcctgtacgatagcaagagagggttcataggcagc
ttcgctagtggcacctacgtttgtgaaaccactgaggctggtgtaagacattacagcgca
ctgtacagagttggtgatgacaaaagcagcagtgatttccacattgagatggagagcagt
gaggcggcagtagaggctggagctcccttcagcatcacttgtgttgcccccctgggtgat
gagtttgagcagcactggctacaccctgtgaaacaggctggcaaggcagtgcagttaaaa
gagagggttaaagatactgtgcgctacaccttgaagatcccccaggcctctgtcctggac
agtggagtctacgaatgctctgtgacaaacatcctgacacaggagaccaaaattaagaaa
gcaaccatctcagttcatgagaaaggattcatctctttggaacctttatttggtcgaatt
gaatttgcaaacatgaatgaagataaagagttcactgtcaatataaatgctcatccaagc
cccaaagtgacttggctgaaggatgatattgaaatcgaaaatgacaattttgcaacaaga
agcacaatgaccaagattgatggagtaaggtatcaaagtgttctgtcactttttggggcc
acccaagaagacaatggcaactacactattaaggttgagaatgagaatgatcagaagagc
ttcacattctccttgagagtaaaagctccatccattgctctgcaccaacaggtggtgccg
attatttcccctagccagaaggaaatggttgtgcagctccattcctcgttcaagctgaca
tgctccggagagagggaggtggattgggatattcccctggatgaggagttttaccacatg
cagtttgaagaggataacagtggacagtttgttgtctctatcagtgtgcagaatgccagt
gttttccacaccagttcctattcctgctactacaaggatgcgaacagcagcaccaccgaa
gacttggaatattcctccatttatatctacgttccagacccagaggcgccatttgttcct
tccgtgtcagtgtttgggacccatgttctggcagctatgggagaaatggagatcccctgc
cgtgtctcaaacccgaataccagtgtcatcctctttaacacagacacacagaagactgta
tcgagcagctatgacagcaaaataggtgccattgggatcttcccttcaggaacctatgtc
tgcaaaactattattaatggggaagaatacaaaagtgaagagtatattgttcatggctgg
atagcgaattctgagcttcaagttgacctcgaggctccaaacactgcagtgttggtgggg
gacaccataaatgtcacctgtgtggcaaagggaagtgaaattctggaggacaattggaag
taccctgggaaaatggcaggcagaggggaaatcaccttgaaggaaaacaaaagagatgtt
gaaatccgctatagcctcactatcaagcatgcttctctgaaggacagtggagtctacgag
tgctccatcacagacattatgagcaccaacatgataacaaaggccgtgaccatcacagtg
tacgagaaaggattcatacaactggaccccatggtctcacaaaaggaatttgccgagctg
gatgaagtgaaggaattcagagtcgacattgaggcctaccctgaaccaaaggcaatctgg
ttcaaagatggtgtggcactcaaggaagtgaatgctgaaacagtcagcactctggaacga
aacagtgaaaccagttacaagagcatcttgaagctcattcgagctaaagaagaggacagt
ggcaactacaccatcagagtttacaacaagaatgagacagagagctacaccttctcattg
caggtgaaagtcccagcagtcatagtagacctgatggacctgcaccagggatcagccagt
gggcagtctgtggtgtgcatcgcaggggggttgcccacacctgaggtcgagtggttcatc
tgcaggaatatcaagcaatgtgccaatgatacatccatgtggactgttcttcctgtgaat
tccactgatattactgtggaaaaccatctagatgaagagaacaggcttgaaagccaagtt
atattcaccaaattggatggcactttggcagtgaagtgtctggctaagaatgaacttgct
gcagttgccagagaagtgaagctggtttcaaacactttacggtcagagctgacggtggcg
gctgcagtgctggtccttctggtcattgtcatcgtgtcactcattgtgctggtcatcatc
tggaaacagaaacccaggtacgaaataagatggcgtgtgattgagtccatcagtccagat
ggacatgaatacatttatgtggatccaatgcagctgccctatgattcccgatgggagttt
cctcgtgatggactcgtacttggtcgaatccttggctctggtgcttttggtaaagtggta
gaaggaacagcttatggcttgagtcggtctcaaccagtgatgaaagttgctgtaaaaatg
ctgaaacctacagccaggtcaagtgagaaacaggccctcatgtcagagctgaaaataatg
acccacctgggaccccatctcaatattgtcaacctgctaggagcatgcaccaagtcaggg
cccatttatattatcactgaatactgcttttatggagaccttgttaactatctgcacaag
aacagggaacatttcttgagcaggcacccagacaagatgaagaaggacctggacatcttt
gggatcaaccctgctgatgaaagcacaagaagctacgtcatcctgtcttttggcagccaa
ggggactacatggacatgaaacaggctgatacgacccagtatgtgccaatgctggagatg
aaagaggactcgaagtattctgacgttcagagatcaaattatgaccacccgccatcccac
aagcagaaggcactaaccgaaactgaagtaaacaatttgctgtcagatgacaacagtgaa
ggtctcagcttcatggacttgttgagcttcacataccaagtagctagaggaatggagttc
ctggcttctaaaaactgtgttcatcgtgatttagcagcgagaaatgttctcctgtctcaa
ggaaagattgtgaaaatctgcgattttggcttagctcgagacatcatgcatgacaacaac
tatgtttcaaaaggcagtaccttcctcccagtgaagtggatggctcctgagagcatcttt
gacaatctgtacacgactctgagtgacgtctggtcctatggaatcttgctgtgggagatc
ttctctctaggtggaactccttatccaggcatggtggtggactccagcttctacaacaag
attaagagtggatacaggatggcgaagcctgaacatgccacccctgccatatacgaaatg
atgacgaagtgctggagcagcgaaccagagaagaggccttccttccacagcctgagtgag
atggtggcgtctttattgcctccggaatataagaagagctacgagaaagttcaccacgac
ttcctcaagagtgaccaccctgcggtgacccgcatgcgcaccgagtgtgaagatgcttac
attggagtcacctacaagaaccacgacaagtcgaaagaccgggagagtggctttgacgag
cagagactgagctcggacagtggctacatcattcccttgccagacctggacccagtctca
gacgaggacttcagcaagaggaacagacacagctcacagacatctgaagagagtgccata
gagacgggatccagcagctccacctttgttaagagggagggggaaactattgaagacatt
gaaatcatagatgatttagtcatggattcaggagaccttgtggaggacagcttcttgtaa
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integrated database retrieval system
