Lepisosteus oculatus (spotted gar): 102682515
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Entry
102682515 CDS
T07349
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03013
Nucleocytoplasmic transport
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102682515 (upf2)
03015 mRNA surveillance pathway
102682515 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102682515 (upf2)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102682515 (upf2)
mRNA cycle factors
P-body specific factors
102682515 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102682515
NCBI-ProteinID:
XP_015207794
Ensembl:
ENSLOCG00000015698
LinkDB
All DBs
Position
LG8:complement(14503445..14537994)
Genome browser
AA seq
1279 aa
AA seq
DB search
MDEKEVCSFSNKEKESGDRRPASSREKGKEDPKVSGKKENAKTVEEKKRRLEEEKRKKEE
KERKKKEEEKLKAEEEQRKREEEEKKQQEEEEKRMQEEEEKRQREEEAARLKEKEEAHQL
HQEAWERHQARKDLRSKNQNAQEGRPEETFFSRLDSSLKKNTAFVKKLKTITEQQRDSLS
NDFNSLNLSKYIAEAVGSIVEAKLKISDVNCAVHLCSLFHQRYADFAPLLLQAWKKHFEA
RKEEKTPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKTIINIDRETHMHVSVVIS
FCKHCGDDIAGLVPRKMKMASEKFNLSFPPSEIINTEKQQPFQNLLREYFTSLTKHLKKD
HRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQD
KTVQEEHGPGIDIFTPGKPGDYDLEGGIWEDEDARNFYENMVDLKAFVPAILFKDNEKSS
QSKDKEDVKDFKDGKDKEVQSTEELELELETLDINDDALELEGGDEADTDDLAKKLLDEQ
GRGQEREGASFSGEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTK
SNRKKLVRALFTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQI
NIETKNKTVRFIGELTKFKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSP
ESHLRASVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPVEKTVRKKRPPLQEYIRKL
LYKDLSKVTTEKVLRQMRKLPWQDPEIKNYLICCMVNIWNVKYNSIHCVANLLAGLVAYQ
EDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFIS
FGVNPDGSPSPLDPPEHLFRIRLVCTVLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKS
LDVWTKDHPFPIDIDYMISDTLELLRPKMKLCCSLEEAMRQVAELEREFLVKLGLANDKD
SKGSSSMEEGEALEDEEDDDDEEGGAETEEQSGNESELNEPEEEEVSENEEEDREEEEEE
NTDYLTDSNKENETDEENTEVTIMGGGLKHVACAEDEEFIQALDKMMLENLQQRSGESVK
VHQLDVAIPLQLKSQLKKGPPPVVGGEGDTEMVDTMQFVMLTRKGNKQQFKILNVPLSSH
LAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQ
HPKGAPNADLIFKTGGRRR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaagaggtgtgttctttcagcaacaaagagaaagagagtggcgacaggcgc
cccgcctcgtccagggagaagggaaaggaagaccccaaggtcagtggtaagaaagagaat
gccaaaactgtagaggagaagaagagaaggctggaagaggagaagcgcaagaaggaggag
aaggagcgcaagaagaaagaggaggagaagctgaaagctgaagaggagcagcgcaagagg
gaggaggaggagaaaaaacagcaggaggaagaggagaagaggatgcaggaggaagaggag
aagaggcagcgggaagaagaggcagctcggttgaaagaaaaagaggaagcgcatcagctt
caccaggaagcgtgggaacggcaccaagcaaggaaagacctgcgaagtaaaaaccagaat
gcccaggagggcagaccagaggagacgttctttagcaggcttgattccagtctcaagaag
aacaccgcctttgtgaagaagctgaaaacgatcacggagcagcagagagattctctctcg
aatgatttcaatagcctcaatctgagtaaatacattgccgaagccgtgggctccattgtg
gaggccaagctgaagatatctgatgttaactgtgctgtgcatttgtgttctctcttccat
cagcgatatgctgactttgccccattactactccaagcctggaaaaagcattttgaggca
agaaaggaagaaaaaacaccaaatgtaagcaagcttagaacagatctgcggtttattgct
gagctcacaattgttgggatttttactgataaagagggtctgtccctgatctatgagcag
ctaaaaactatcatcaacatagaccgcgaaacacacatgcatgtttcagtggttatcagt
ttttgcaagcattgtggggatgatattgctggtctagtgcctaggaagatgaagatggca
tctgagaagtttaacctcagtttccctccaagtgagataattaatacagaaaagcagcag
cccttccagaacctcctgcgggagtatttcacatcgctgactaaacaccttaagaaggat
cacagagagctgcagaacattgagagacaaaacaggcgtattctacattccaagggggag
ctgagtgaagatcgacacaaacaatatgaagagtttgccacttcttaccaaaagctgctt
gctaacactcagtccttagcagatctcctagatgaaaacatgccagagctgcctcaagat
aaaacagtgcaagaagaacatggacctggaatagacatctttactcctggcaaacctgga
gattatgacctggagggaggaatctgggaggatgaggatgcaaggaatttttatgaaaac
atggtggacctgaaagcctttgtgccagctatattgttcaaagacaatgagaagagctct
cagagcaaagacaaagaggatgtaaaagattttaaggatgggaaggataaggaagttcag
agcactgaggagttggaactagagttggaaaccttagatatcaatgatgacgctctcgag
ctggaaggaggggatgaggcagacacagatgacctcgctaagaagctactggatgaacaa
ggaagaggtcaggaaagagagggagcctctttttctggagagcaagaagacgaggaagcc
agcactgggtcccacctgaagctgattgtggatgcctttcttcagcagctgcctaactgt
gtgaatagagacttaatagacaaggccgcgatggatttctgtatgaatatgaacaccaaa
tctaataggaaaaaacttgtccgagctctcttcacagttcctaggcaacggttggacttg
ttgccattttatgctcgtctagttgctacactgcatccttgcatgtctgacgtggcagag
gacctgtgttcaatgttgaagggagatttcaggtttcatataaggaagaaggatcagatc
aacatagaaacaaaaaataaaactgtgaggtttattggtgaactaaccaagttcaagatg
ttttctaaaactgacacacttcattgtttaaagatgctattgtctgacttttctcatcac
cacattgagatggcatgcacccttctagagacctgcggcaggtttctcttcaggtctcca
gaatcacacttaagagctagtgttcttctggaacaaatgatgcggaagaaacaggcaatg
cacttagatgcccgctacgttacaatggtagaaaatgcttattattactgtaacccacca
cctgttgagaaaaccgttcggaagaagcgacctccacttcaagaatacatccggaaactc
ctttacaaggacctttccaaagtcactactgaaaaggttttgcgacagatgagaaaattg
ccctggcaggacccagagataaaaaactatttgatttgttgtatggtgaatatctggaat
gtgaagtacaatagtatccactgtgtggcaaatctgctagcagggttggtggcttatcag
gaggatgtgggcatccacgtggtagatggggtcttagaggacatcaggctgggaatggag
gttaaccagcctaaattcaatcaaaggcgtatcagcagtgctaagtttttgggagaatta
tacaactatagaatggtggagtcagcagttatctttcggactctgtattcctttatttcg
ttcggtgtaaaccccgatggcagtccaagcccactggacccgccagagcacctgttccgc
atccgactggtttgcactgtgctggacacctgcggacagtactttgacagaggctccagc
aaaaggaaacttgactgctttctcatttacttccagcgttatatctggtggaaaaagagc
ctggacgtgtggactaaagaccacccctttcctattgatattgactacatgatcagtgac
acgttagagctcctacgtcccaagatgaaactctgctgctcactggaggaggctatgagg
caggtcgcagagcttgagcgagagttcctggtaaagcttggtctggccaatgataaggat
tccaaaggctcaagtagcatggaagaaggagaggctctggaggatgaggaagatgatgat
gatgaggaaggtggggctgaaactgaggagcagtctggaaatgagagtgaattgaatgag
ccagaggaggaggaggtctcagagaacgaggaagaagacagagaggaagaggaggaggag
aatactgactacttgacagactccaataaagagaatgaaaccgatgaagaaaacacagag
gtgactataatgggtggaggtcttaaacatgttgcctgtgcagaggatgaggaatttatt
caggctctggataaaatgatgctggagaatcttcagcagcggagtggagaatcagtcaaa
gtgcatcagctggatgtagctattcccctgcagctgaagagccagctgaagaagggccct
cctccagtagtaggtggggaaggagataccgagatggttgatacaatgcagtttgtcatg
ttaaccaggaaggggaacaagcagcagttcaagatccttaatgtcccgctttcatcacat
cttgctgccaaccacttcaaccagcagcaggcagagcaagaggagaggatgcgtatgaag
aagctgaccctggacatcaacgagcgccaagagcaggaggactatcaggagatgctgcag
tccctggctcagcgcccagcccctgccaacacgaaccgagaaagacggccacgctaccag
caccctaaaggagcacccaatgctgatctcatctttaagacaggagggaggagacgttga
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integrated database retrieval system
