Lepisosteus oculatus (spotted gar): 102682583
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Entry
102682583 CDS
T07349
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102682583 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102682583 (ddx5)
03009 Ribosome biogenesis [BR:
loc03009
]
102682583 (ddx5)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102682583 (ddx5)
Spliceosome [BR:
loc03041
]
Complex A
U1 snRNP components
U1 related factors
102682583 (ddx5)
Complex B
102682583 (ddx5)
Ribosome biogenesis [BR:
loc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102682583 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
MMADHC
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102682583
NCBI-ProteinID:
XP_006635273
Ensembl:
ENSLOCG00000013534
LinkDB
All DBs
Position
LG10:complement(40346687..40353357)
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AA seq
625 aa
AA seq
DB search
MPGFSDRDRGRDRGFGGAPRFGGSRGGAPPGKKFGNPGERLRKKHWNLDELPKFEKNFYK
EHADVTRRTAQEVEQYRRSKEVTVKCRDCPNPIMKFHEASFPSYVMDVITKQNFTEPTPI
QAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQI
NVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDDLTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSSKTGTAYTFFTPGNIKQANDLISVLREANQAINPKLIQMVEDRGG
RSRGRGGFKDDRRDRYSGGRRDFGSFRDRDNDDRGFGSGPKKVFGTKTQNSGYGGANFEN
SNTFGNLGNGYGTNGQSSYGAGNQAGSFGNQNFQTTQFGAANPGAAQNGMSHPQFPFNPQ
QQQQPQPPPPPQPMVTYPMPPAFPQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcctggtttttctgacagagaccgtgggagagatagaggttttggcggcgcgccgcgg
ttcgggggcagccgaggcggggcccccccggggaagaagttcgggaaccccggcgagcgc
ctgcggaagaagcactggaacctggacgagctgcccaagttcgagaagaacttctacaag
gagcacgccgacgtgacccgcaggaccgcgcaagaagtggagcagtacaggaggagcaag
gaagtcaccgtgaagtgcagggattgtccaaaccccataatgaagttccatgaagcaagc
ttcccatcctatgtaatggacgtgatcaccaaacagaattttaccgaacctacccccatt
caagcacaaggctggccggtggcgttgagtgggaaggatatggttgggattgcacagact
ggatctgggaaaacgctctcgtatttgttgccagcaattgtacacatcaaccaccaacca
ttccttgaacatggagatggtcccatttgcctggtactggctccaaccagagagctggct
cagcaagtccagcaggttgctgctgaatacggtagagcctccagactgaagtccacgtgc
atctatgggggcgcccctaaaggacctcagatccgtgacttggagagaggcgtcgagatc
tgcattgccacacctggaaggctcatcgacttcctggaagtcggaaagacgaatctccgc
cgatgcacttacctggtacttgacgaggccgacagaatgcttgacatgggctttgagccg
cagatcaggaagatcgtagatcagatcaggccggacaggcaaaccctgatgtggagcgct
acctggccgaaggaggttcggcaactggcggaggactttctgaaggagtatgtccagatc
aatgtgggggcactgcagctgagtgccaaccacaacatcctgcagattgtggatgtgtgc
aatgatggggagaaggatgacaaacttcttcgtctgttggaggaaatcatgagcgagaag
gagaacaagactatcatcttcgtggagaccaagaggcgctgtgatgacctcacaaggagg
atgaggagagatggctggccagcaatgggtattcatggagacaaaagtcagcaggaacga
gactgggttctcaatgaattcaagtatgggaaagcgccgatcctcattgcaacagatgtc
gcatccagaggtctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcttctgaagactatatccaccgcattggaagaacagcccgcagtagcaaaacgggcaca
gcttacaccttctttacccccggcaacattaaacaagcgaacgacctcatctctgtactc
cgagaggctaatcaagccatcaatcccaagctcatccagatggtggaagacagaggaggt
cgttccagaggtagaggtggctttaaagatgaccgtcgggataggtattcaggaggcagg
agggattttggtagctttagggatagggataacgatgataggggatttggcagtggacca
aagaaagtctttggcacaaagacacagaacagcggctatgggggagccaactttgagaac
agcaacacctttgggaaccttgggaatggctatggcactaatggacagtcgagttatggt
gctggcaaccaggcgggttcctttgggaatcagaatttccagactacacagttcggagca
gccaatccaggtgccgcccagaatggcatgagtcatccacagttccctttcaacccccaa
cagcagcagcagcctcagccgccaccacccccacagcccatggtgacctaccccatgccc
ccagcatttccgcagtaa
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integrated database retrieval system
