Lepisosteus oculatus (spotted gar): 102682705 Help Entry 102682705         CDS       T07349                                  Symbol cdh23 Name (RefSeq) cadherin-23 isoform X1   KO K06813   cadherin 23 Organism loc  Lepisosteus oculatus (spotted gar) Brite KEGG Orthology (KO) [BR:loc00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:loc03037]     102682705 (cdh23)    04515 Cell adhesion molecules [BR:loc04515]     102682705 (cdh23) Cilium and associated proteins [BR:loc03037]  Primary cilia and associated proteins   USH complex and associated proteins    102682705 (cdh23) Cell adhesion molecules [BR:loc04515]  Cadherins   Major cadherins    102682705 (cdh23) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_FAT4_N Cadherin_CELSR2_9th Cadherin_2 Fibulin_C PCDH15_12th Motif Other DBs NCBI-GeneID:  102682705 NCBI-ProteinID:  XP_015202144 Ensembl:  ENSLOCG00000008670 LinkDB All DBs Position LG5:complement(16112728..16311806) Genome browser AA seq 3363 aa AA seqDB search MEGHTSGTIRNLLLSALILHSVRPVMAFNRLPYFLNYFFDNFFLIYEDTPVGASVTQLLA RDPDNEPLVFGVVGEEAMRYFAVESNTGVVWLRQPLDREAKSEFQVEFSVSDNQGVIKGT VNIQVGDVNDNSPTFHNQPYSVRIPENTPVATPIFIVNATDPDQGTGGSVLFSFQPASPF FAIDGARGVVTVTRPLDYETTQAYQLTVNATDQDKTRPLSSLANLAITITDVQDMDPVFI NLPYSTNIYENTPPGSLVRMITAIDQDRGRPRGIGYTVVSGNTNSIFALDYISGALTLNG QLDRENPLYSAGFILTVRGTELNEDRTPSNATVTTTFNILVIDVNDNAPEFNSSEYRVRI TELAQVGFALPLFIQAQDKDEGLNSMFQVFLTGNNSDHFTISPTSVQGRADIRIRVAVPL DYETINSYQFSLYANETSSEHAGFARVRIDLINENDNRPIFSKALYNISLTENTSVGSSV LQVLATDNDFGTFGSVRYFFSDEPDQFTVDQDTGWVTLSGRLDFELTRRYTLTVIARDGG GEETTGRVRINVLDVNDNAPIFQKEAYLGSLRENEPAVQQVARIRATDEDSPPNNVISYS IISASAFPNYFDISIIEGYGVISVTRPLDYELVPGGFIYLMVMAKDAGAPPLNSTVPVTI ELFDENDNPPTFSQPSYIITVPENIIAGATVLFVNATDKDASREFGQASLIYSLEGSSQF RLNTRSGEITTTALLDREMKSEYILIVRAVDGGVGPTQKTGIATVNITLLDINDNAPVWT GEPYEVNVVEMSPAGTDVITVLAVDPDRSENGSVVYSISPPNRFYTINTTTGKIRTSGAV LDRESTQPGDTQLMRTIIVSATDRGTPPLRSSASTTVLVNLLDLNDNDPTFLNLPFNAEV PEGLPIGSSVFKVSVVDPDEGDNGQVSLSMQVGMPRLDFVINSTSGVVVSTATLDRERTA QYFLRVVVADAGQFPRSSTSTLTITVLDMNDETPTFFPSVYNITLLENVARDYMVTRLSC TDNDTGLNAELSYFITGGNQDGKFSVGFRDGVVRTVVSLDRETQAFYSLIIEAIDNGPAG GRRTGTATVNVVVQDVNDNRPIFLQNSYETSVLETIPQGTSIVQVQATDADEGENGRVLY RILSGNSNNIFNISEGTGLVTRGQRPLDRETSSSHVLEVEAYNSDLGRMRSSVRVIVYVE DANDEAPVFTQQQYNRLGLRETAGIGTSVIVVRATDRDMGDGGAVAYSIVSGADRKFEID VSTGLVTTVDYLDYETRTSYLMNVSATDQAPPFHRGFCSVYVTLLNELDEAVAFSQPTYE AALLENIATGTEVLQVRARSADNLNQITYRFDPDTSPLALALFKIDSVTGRITVMGQLDR EKGDVYTLTVVADDGGPKKDSTVKVSITILDENDNSPEFDITSDSSVDVPENTPRGRRVA VVLGRDRDAGKNGLVNFTLVAGNIREVFEIHTTNNTYGEVFVVSPLDRETIDRYLLVVRA VDNGSPPRHTDRALTINILDVNDNAPIIQSSRGYNVSISENVGGGTAVMRVQATDRDIGS NGMLFYYITQGNEDLTFRMDRVTGEVVTRPSPPDRERQQTYRLSVTVEDDGTPPLSATTT IWVSILDENDNSPQFGQPVYEVTLSEGPETASIVIATVNASDRDEGPNGTVIYRIVDGNL GNTFSINRTSGTIVALRELDYEMSHGRYTLVITATDQCPITQLRLTSSTTVLVNVIDVND VTPTFPRAVEGPFEITEGQPGPRVWTLKATDEDSGLNGQVEYSITAGDPQNEFVVSPVEG ELRVRRDAELDRENIPFYNITITARDLGTPSRSSTVVVSVRVLDINDNDPVLLNLPMNSS VSEAARISTSVARVQAFDADSGRNALLTFNITAGNTDGAFYINDTTGVVLVNRPLDRERV SEYRLTITVKDNPDNPRIARRDSDVLVVSILDENDNRPIFTQSSYRGEILENSLPGSVVS ILNGPVLAVDKDVGVNAVVTYRLLGQRLDLFTVDSSTGAVMVRHGAVLDREALLDPRLEL MLVGEDVGGLNTSVPLTVTVLDQNDNPPQFRPPDLTVHLPENSPAGVVVTQLSAADLDSG ANGWLSYRIESGAQDRFVIDVLTGAVLVGNATLDREERSSYRLVVVAADRGTPPLSGTAT LSVLLDDVNDSRPRFLIPVQTVNVNESTNLGTVIATVRAEDPDLRTRLEYYIIAVEARDD SNTPVSGLQDAFGIDFHTGAVFVRSPLNRELVASFEITISVHDNASDVIDQSVSMPNAKL TVNVLDVNDNAPRFRPFGVSNFSEQILEGAQPGTTLLSVTAVDPDKGPNGQVTYQLLHLP HGGYVRLEDPSAGKIIANRTVDFEQVQWLNFTVRAQDQGAPPRFAELPVFLRIMDINDNN PVFSQPSYQKPVFEDVALGTVIIRVSATDADSGLFAVIEYRLVDGEGRFGINPSTGDIYV LSPLDRETKDHYTLTAVARDNPGGSTNNRRENSVQVLVTVLDVNDFRPRFAERVYSTSVF ENEPGGTSIITMSATDLDEGENGILSYTLQGPGAEAFSMELDSGLVRSKRLLQSFERFNL TVVATDRGRPPLWGTTALHISVIDVNDNRPVFVRPPNGTIMHILEEQPPGLVVYEVFATD SDEGVNGEVRYSFLQTGAGNRDWENFHIDAETGVITTAVRLDREKQALHSLIVVAYDLGQ PVPYETTQPLQVALSDIDDNEPVFLKPPRGSLPYQSLWVPEHSLPGTVVGNVTGAVDADE GSNAVVYYFIAGGNNKGIFQLSPEGVLRVTQDLDREETPVYPIIVKASSNRNWMPSQGQR SSRARALNPNLDPTLQEVRVYLEDINDQPPRFTKPEYTAGVAADAKVGSDLIRVQAVDND IGNNSLVLYHILSIRYVKLQSNDSHDVGNVFIIGETDGIIRTFDLFTAYSPGYFVVDVLA SDLAGHTDIATIGIYILRDDQRVKIVINEIPDRVRQFQEEFVSLLSNITGAIVNTDDVQF HVDKKGRVNFAQTDVLIHVVNKQTNRILDVERVIQMIDENKEQLRNLFRNYNVLDVQPAV TGRAPDDLTTLQMAIIILAVLLFLAAMLFIFMNWYYRTVHKRKLKAIVAGSTGNQGFMDI LDMPNTNKYSFEGANPVWLDPFCRNLELAAQAEHQDDLPENLSDITDLWNSPARTHGTFG REPQASKPEDDRYLRAAIQEYDNIAKLGQIMREGPIKGSLLKVVLDDYLRLKKLFAARLV TKSTSNGDQSSVTELIQSDLDDDDEDQGSGGRGTLRFKHKHPVELRGPEGIHAVHGSTGT LLTSDLNSLPEDDQRALGRSLEALHGEAGPYSDRNARTESAKSTPLHKNRETIMESPLEI TEL NT seq 10092 nt NT seq  +upstreamnt  +downstreamnt atggaggggcacaccagcgggacaatcaggaatctcctcctgtcggccttgattctccac tctgtcaggccagtcatggccttcaatcgcttgccttatttcctgaattacttctttgat aatttcttcctgatctacgaggacaccccagtaggtgcctccgtgacgcagctgctggcg cgggaccctgacaacgagccgctggtctttggcgttgtgggtgaggaggccatgcgctac tttgctgtggagagcaacacaggcgtggtttggctgagacagcccctggaccgtgaggcc aaatccgagtttcaggtggagttctctgtcagtgacaaccaaggggtcatcaaggggaca gtgaatatccaagtgggggatgtgaatgacaattctcccaccttccacaaccagccgtac agcgtgaggatcccagagaacacacctgtggccacacccatcttcattgtgaacgccaca gacccagaccagggcacaggtggaagcgttctcttctccttccagcctgcctcacccttc ttcgccatcgacggggcacgtggcgtcgtcacggtcacacgaccacttgactatgagaca acacaagcttaccagctcaccgttaatgccactgaccaggacaagacacggccactctcc tcccttgccaacctggccattactatcacagatgtgcaggacatggaccccgtcttcatc aacctcccctacagtaccaacatctacgaaaacactcctcctggcagcctcgtgcgtatg atcactgccatagaccaggaccgtgggcgtcccaggggcattggctatactgtcgtctca ggcaacaccaacagcatctttgctctggattacatcagcggagcgctaacgctgaatgga cagctggaccgcgagaaccctctctacagtgccggattcattcttactgtcaggggcacg gagctcaatgaggaccgtacgccttccaatgcaacagtcaccaccaccttcaatatcctg gtcattgacgtcaacgacaacgcacccgagtttaacagctcggagtaccgcgtgcgcatc actgagctggcgcaggtcggcttcgccctgccactcttcatacaggcccaggacaaggac gagggcttgaacagcatgttccaagtgttcctgacaggtaataactcagaccacttcacc atctcaccaacctctgtccagggtcgagcagacattcgcattcgtgtggccgtgcccctg gattatgagacgatcaacagctaccagttttcactttatgccaacgagacatcatcggag catgctggttttgcccgggttcgcattgacctgatcaatgagaatgacaaccgccctatc ttcagcaaggcgctatataatatcagcctaacagaaaatacatcagtgggtagctctgtg ctgcaggtcctggccacggacaatgactttgggacctttggatcagtgcggtatttcttc agcgatgagcctgaccagttcaccgtggaccaggacacaggctgggtgacgctgagcggc cgactggatttcgagctgacaagacgctacacactcacagtcatcgctcgggatggggga ggcgaggagaccacagggcgtgtgcgcatcaacgtcctggatgtcaatgacaacgcgccc atcttccagaaggaggcatacctgggttctctgagggaaaatgagccagcagtgcagcag gtggcccgaattagggcaacagatgaggactctccccccaataacgtcatcagttactcc atcatctcagcctctgcgtttccaaactactttgacatatccatcattgaggggtatgga gtgatcagcgtgactcggccgctggactacgaactggtccctgggggcttcatctacctc atggtcatggcaaaggatgctggggcaccccccctcaacagtactgtccctgtcaccatt gagctgtttgatgagaatgacaacccacccaccttcagccagccttcctacatcatcact gtgcccgagaatatcattgcaggggcaacagtgctgttcgtcaatgccacagacaaagat gcatcacgagagtttggccaggcctccctcatctactccctggagggatcttcacagttc cgcctcaacacacgttccggggagatcacaaccactgcccttttggaccgagagatgaaa tcagagtacatccttatcgttcgagctgttgatgggggtgtgggcccaactcagaaaacc ggaattgccacggtcaatatcactctgctggacatcaacgacaacgcccccgtgtggaca ggtgagccatatgaggtcaacgtggtggagatgagccctgcaggcacggatgtcatcacg gtgctggcagtagaccctgacaggtcggagaatggaagtgttgtgtacagcatcagcccc cccaacaggttctacaccatcaacaccacaacagggaagatccggaccagcggcgctgtg ctggaccgtgagagcacacagcctggagacacgcagctcatgaggaccatcattgtctct gccactgaccgtgggaccccacctttacgctcctcagccagcaccacagtgctggtcaac ttgctggacctcaacgacaatgaccccaccttcctgaacctgccattcaatgctgaggtg ccagaggggcttcctatcggctcatctgtgtttaaggtgtcggtggtagaccccgacgag ggtgacaacggtcaagtcagcctctccatgcaggtggggatgccgcgcctggactttgtc atcaacagtacatcaggcgtggtagtctccacggcaacgctggaccgcgagcgcacagcc cagtactttctgcgtgtggtggtggcggatgcaggccagttcccccgcagctccaccagc actctaaccatcacagtgctggacatgaacgatgagactcccaccttcttcccatctgtg tacaatatcaccctgctggagaatgtggcacgggattacatggtcaccaggttgagctgt acagataatgacactggactgaatgctgagctcagctacttcattacagggggcaatcag gatggcaaattcagcgtgggcttcagggacggtgtggtgcggactgtggtcagcttggac agagagactcaggcgttctactctctcattatagaggccattgataatgggccagcagga gggcggcgcacaggcacagccacagtgaatgtcgtggtgcaggacgtcaatgacaatcgg cccatcttcctgcagaacagctacgagaccagtgtgctggagaccatcccccagggcacc agtatagtacaggtgcaagccacagacgccgacgaaggagagaacggcagggtgctgtac cgaatcctgtctggcaacagcaacaacatcttcaatatcagtgagggcacaggccttgtg acacgtggacagcgccccctggaccgagagactagcagctcccatgtgctggaggtggag gcctacaacagtgatctgggccgcatgaggagctctgtccgggtcatagtgtatgtggag gatgccaatgacgaggcacccgtgttcacccaacaacagtataaccgcctgggcttgaga gaaacagcaggcattggcacctctgtgatcgtggtccgtgcaaccgaccgcgacatgggt gatgggggtgcagtggcctatagcattgtgtcaggggcagacaggaagttcgagattgac gtgagcacaggcctggtgaccactgtggactacctggactatgagacacggaccagctac ctgatgaacgtgtcagccacagaccaggccccacccttccaccgggggttctgcagcgtt tacgtcacactgctcaatgagctggacgaagctgtggccttctcccagcccacctatgag gctgcactgcttgagaacatcgccacgggaactgaggtgctgcaagtccgcgcccgctcc gctgacaacctcaatcagataacctaccgcttcgacccagacacctccccactcgccctg gcactcttcaagatagacagcgtcactggtcgtatcacagtgatgggccagctggaccgg gagaagggggatgtttacacactaacagttgtggctgatgatggaggacccaagaaggac tcaactgtgaaggtgtcaatcaccatcctggatgagaatgacaatagccccgagtttgat atcacatctgattcatcagtggacgtgccagagaacacaccccgtgggagaagggtggct gtggtgctggggagagacagggacgctggaaagaatggactggtgaatttcacactggtg gcagggaatattagagaagtgttcgagatccacaccactaataacacgtatggggaggtc tttgtggtatcaccgcttgaccgagagaccatcgatcgctatttgctggtggtccgggca gtggacaacggctctcccccacgtcacactgaccgcgccctcaccatcaacatcttggat gtgaatgacaacgcaccaataatccagagttcaagaggctacaatgtcagcatcagcgag aatgtgggcggaggaactgcagtgatgcgggttcaagccacggaccgtgacattggctcc aatggcatgctattctactacatcacccagggaaatgaggacctcaccttccgcatggac agagtcaccggggaggtagtcacccgaccctcaccccctgaccgcgagcggcagcagacc taccggctgtccgtcaccgttgaggacgacggcactcctcccctctcggccaccaccaca atctgggtgtccatcctggatgagaatgacaactcgccccagtttgggcagccagtgtat gaggtcacactcagcgaggggccagagacagccagcatagtcatagcaactgtcaatgcc agtgaccgcgatgaggggcccaatggcacggtgatctaccgaatcgttgatggaaacctg ggaaacactttcagcatcaatcgcacctctggaacaattgtggcactgagggagctggac tatgagatgagtcatgggagatacacactcgttatcacggcaacagaccagtgtccaatc acccagctgcgcctgacgtccagcactacggtcctggtgaatgtgattgatgtgaatgat gtgacccccactttcccgagagctgtcgaggggccttttgagattactgagggccagccg gggccccgtgtctggactctgaaggctacagatgaggactcgggcctcaatggacaggtg gagtacagtatcacagccggagacccacagaatgagtttgtggtgtccccagtggagggg gagctcagggtgaggagggatgcagagctggaccgtgagaacatccctttctacaacatc accatcacagcacgagaccttggcacaccatcacgcagcagcacagtggtggtgagtgtg cgagtgctggacatcaatgacaatgacccagtgctgctgaacctgcccatgaacagcagt gtgagcgaggctgcgcgcatctccacctctgtagctcgggttcaagcctttgatgccgat agcggccgcaatgccctgctcacattcaacatcactgcagggaacactgacggagccttc tacatcaacgacaccacaggggtggtgctggtgaaccggccgctggaccgggagagagtg tcagagtacaggctgaccatcactgtcaaggacaaccccgacaacccccgcattgcgcgc agggattctgacgtactggtggtgtccatcttggatgagaatgataaccgaccaatattc acacaatcaagctaccggggagaaattctggagaattccctcccaggcagtgtggtgtcg attctgaatggaccagtcctggcagtggacaaggatgtgggagtcaatgctgttgtgacg taccgccttctgggccaaagactggacctgttcacagtcgactccagcacaggtgctgtg atggtacggcacggggcagtgttggaccgcgaagccctgttggacccccggcttgagctg atgttggtgggcgaggatgtgggggggctgaacaccagtgttcccctaacagtcactgtc ctggaccagaacgataaccctccccagttcagacccccagacctgaccgtgcacttgccc gagaacagcccagctggggtggtggtcactcaactctcagcagctgatctcgactcagga gctaatggctggctgtcgtaccgtatcgagagtggagctcaggaccggtttgtgatcgac gtcctcacgggcgctgtgctggtgggcaatgccacgctagaccgggaggagcgtagttcg tatcgactggtggtcgtggctgctgaccgcggcacgccccccctctcaggcactgccacg ctgtctgtcctgctggatgacgtgaacgactcgcgcccgcggttcctgatcccagttcag actgtcaatgttaacgagtccacaaatctcggcaccgtcattgccactgtgagagcagaa gaccctgacctccgaacccggctggagtattacatcattgcagtggaggcacgagacgac agcaacacccctgtcagtggcctgcaggacgcctttggcattgacttccatactggtgca gtgtttgtaagaagccctttgaaccgcgagctggtggccagtttcgagattaccatctct gtgcatgacaacgccagtgacgttattgaccagtcagtcagtatgcccaatgcaaagctc acagtcaacgtcctggatgtcaatgacaatgcaccccggttcaggcccttcggtgtgtcc aacttctccgagcagatcctggagggagcccagcccggcaccacactgctgtctgtcact gctgtggacccagacaaaggccccaatggccaggtcacctaccagcttctgcacctgccc catgggggttacgtgcgtctcgaggacccctctgcaggtaagatcattgcaaatcgcacc gtggactttgagcaggtgcagtggctgaacttcacagtgcgggctcaggatcagggcgcc cctccacgctttgctgagctgcctgtcttcctgcgcatcatggacatcaatgacaacaac cctgtcttcagccagccttcgtatcagaagccggtgttcgaggatgtggcactggggacc gtgattatacgtgtcagtgcgacagacgctgactcgggactgtttgctgtgatcgagtac aggctggtggatggcgaagggcgctttgggatcaacccctccacgggagatatctatgtc ctgtcccctctggaccgggagacaaaggaccattacactctgaccgcagtagcccgggac aaccctggaggcagcaccaacaaccgccgtgagaattctgtccaggtgctggtcacggtg ctagacgtgaatgatttccgtccacgttttgcagagcgtgtgtatagcaccagcgtgttc gagaacgagccaggaggcacctccatcatcactatgtctgccactgaccttgatgaggga gagaatggcatattgagctacacgcttcaaggacctggagcagaggcgttctctatggag ctggattctggactggtacgctccaagcggctactccagtcctttgagaggttcaacttg actgtggtagccacagaccgtggccgcccaccactctggggtacaactgcattgcacata tccgtcattgacgtcaatgacaaccgccctgtcttcgtccggccacccaatgggaccatc atgcacatcctagaggaacagcctccagggttggtagtgtatgaggtgtttgcaacagac agtgatgagggcgtgaacggagaggtacgctacagcttcctgcagacaggcgcagggaat cgagactgggagaacttccacatagacgcagagacaggggtcatcactactgcagtcaga ctggaccgagagaaacaagccctgcatagccttatcgtcgtggcctatgacctgggccaa ccagtaccatacgagaccacgcagcccctgcaggtggcgctatctgacatcgatgacaat gaaccagtcttcctcaagccgccgaggggcagcttgccatatcagtcactgtgggtgcca gagcactctcttcctggcacggtggtggggaacgtcacaggtgcggtggatgctgacgag ggttcaaatgctgtggtctactacttcattgcagggggcaacaataaaggtatatttcag ctgagcccagagggagtactgcgtgtgactcaggatctagaccgtgaggagacacctgtg taccccattatcgtcaaggcctccagtaaccgaaactggatgccttcccagggtcagagg tcatcccgtgcacgtgcgctcaaccccaaccttgaccccacactgcaggaggtcagagtt tacctagaagacatcaatgaccagcctccccgctttaccaagccagagtatactgcaggt gtggcagcggacgcgaaagtgggttctgaccttatccgggtgcaggcagtggacaatgac attgggaataatagcctggtgctgtaccacatcctgtccatccgctacgtcaaactgcag tccaacgactcccatgatgttggcaatgtcttcattattggtgagacagatggtatcatt cggacctttgacctgtttacggcgtacagtcctgggtattttgtggtggacgttctggcc agtgacctggcaggccacactgacatcgccactattggtatctacatcctgagggatgac cagcgcgtcaagattgtcatcaatgagattccagaccgcgtgcggcagttccaggaggaa tttgtcagcctgctgtccaacattaccggggctattgtcaatacggatgatgtgcagttc catgtggataagaagggccgtgtgaactttgcacagactgatgttcttatccatgttgtt aacaaacagaccaaccggatccttgatgtggagagggtgatccagatgattgatgagaac aaggagcagctgcgaaatctgttccggaattacaatgtgctggacgtgcagcccgctgtg actggcagggcacctgatgacctcaccactctgcagatggccatcatcatcctggctgtg ctgctcttccttgctgccatgctgttcatcttcatgaactggtactacaggactgtacac aagagaaagctgaaggccatagtagcaggatcgacaggtaaccagggcttcatggacatc ctggacatgcccaacaccaacaagtactcctttgaaggggcgaacccagtgtggctggac ccattttgccgaaatctggagctggcagcgcaggcagagcaccaggacgacctgcctgag aacctgagtgacatcactgacctttggaacagccctgccaggacacacgggacatttggc cgagagccacaggcctccaagcctgaagatgaccgctacctgcgagctgccatccaggag tacgacaacattgccaagctaggccagatcatgagagaggggcccatcaagggctctctg ctgaaagtggttctggacgactatctgaggctgaaaaaactgtttgcagcacgactggtc acgaaatccaccagcaacggagaccagtcttctgtcactgagctgatccagagtgacctg gatgatgatgatgaggaccaggggtcaggaggccgcgggaccctccgtttcaagcacaag cacccagtggagctgcgtgggccagagggcatccatgctgtgcacgggagcacaggcact ctgctgacctctgacctcaacagcttgcctgaggatgaccagcgtgccctgggccgctcc ttggaagccctgcatggcgaggcgggcccctatagtgaccgcaacgcacgtaccgagtcc gccaagtccacgccactgcacaagaacagagagaccatcatggaaagcccactggagatc acagagctatga

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