Lepisosteus oculatus (spotted gar): 102683426
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Entry
102683426 CDS
T07349
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102683426 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loc03000
]
102683426 (arid1b)
03021 Transcription machinery [BR:
loc03021
]
102683426 (arid1b)
03036 Chromosome and associated proteins [BR:
loc03036
]
102683426 (arid1b)
Transcription factors [BR:
loc03000
]
Eukaryotic type
Helix-turn-helix
ARID
102683426 (arid1b)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102683426 (arid1b)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102683426 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
102683426
NCBI-ProteinID:
XP_015208997
Ensembl:
ENSLOCG00000016845
LinkDB
All DBs
Position
LG1:complement(49537065..49776311)
Genome browser
AA seq
2284 aa
AA seq
DB search
MIMAAQVTTSPATTGSKNPNLSGGLNQDLNSGKSGGGTVQGSGAILGVGDGTNTMNNVDH
HHHHHHHNELSMANTTSSSANNTSDLREKEGVNSAASLSSSNSATSSSMETGLIANHKLK
NVGGGDPPPPSHHHTPTQPQPPRFSQFQQLHSHQIQNNNINNNSNSGGGNQAQVPGEAEN
RQHGGKEHILGNQVGQQQPLLNKSEEEGRACKSGDQMGSRYEHANLGPANNNNSSSNSNN
SSQPQSAGGTTSTVPEFNNYYGNARGGPCFDQHGGQQSPGMGIMHPSAPNSMDSVQNSHE
GYHNSQYNHYPSYRPGYGGAGYGIMSSPRQGSHTLMGPGSNSHSSAAGHGKIAMAAASAP
GGSVGGFQRFPGQSQHPSGATPTLNQLLTSPSPMMRGFSGGGYPEYSGPAAPPQQQASVG
LGKDASSQYGSTAHGWGGHQRNHPVMSPGNTGQVISRPQAGAVDSMAMKRSQLYGVGSNP
YSQQPQQQQQQPPPQQSGTYPGQPYGSPTAHRYPMGMPGRSQAAMGGVQYPQSQQMPPQY
SQQGMSGYCQQGQPPYFSQPQPPSALTQPAYMQPRAPAQQEVPQESYGNRSQPSMTPGKP
SHEDMNLIQQDRPSSLPDLSGSIDDLPTGTEAALSSAVSASGSTSSQGEQSNPAQSPFSP
HASPHLSGMRGGPSPSPVGSPGGSNQSRSGPISPASIPGSQMAPQTPGNLSDAGSHSTMS
QSPMSQERGFMGGMQRNPPVPPYGPQGSGPPMSPHPSPGAQMHHGLGSYQQGSSSNTYGP
QSGQYGPQGNYPRPPSYGGTPSANYSGPGPGLSNSLGMNASSPMHGQGPGQPCGSMPMGR
APGSGMSGRPYSGGMSNMAPSSPSMPQPTGPGMGPPLPSVNRKAQEAAAAVMQAAANSAQ
SRQSNYSGMNQMGMMGSSSPYSQTMGNSSGMMTSQGPPYNTPPSGPMSVAGDMMMAGDTK
LKGDTKEESIPAPEPKAKDSYSSQCISQPPTPGTLPVPSPLSPSPASLSSYQGDDSDSIS
SPAWPKTPSSPKSSSSTVTSEKITKLYEMGNEPERKMWVDRYLSFMEERGTPVPNLPAVG
KKPLDLCRLYMSVKDIGGLAQVNKNKKWRELSTNLNVGTSSSSASSLKKQYIQYLFAFEC
KVERGEEPPPEIFAMGDNKKQAKIQPPSPANSGSLQGPQTPQSSSSSSVAEMPGDLKPPT
PASTPHAPMTSLQGGRNSGVSVQDLFSDIGDPAFQKQNSMAPGAPFQQGMNMPEVMMRMQ
FEANKDPFGGMRKVPGSSEPFMPGQLPNSGMPDMYSRTPSGSMSGLGMSHRQQYPYGPGY
ERRPEHGIGPEGSMGPPGNQSNMVPSNNDPSMYSPNRYPSQQRHEPYGQQYPGQGPPAAQ
MPYGAHQPGMFPQQQAYKRPMDGMYGPAAKRHEGDVYNVPYGGQQQDVYGQYGSGYSGPE
RRPLQSQYPYPYSRDRMQTSGHTPPQPAQQHGISSQMLSGPLQQSSSSGPAEGPQPNVWP
SRTDLPYPYPGRQAPGGSSQVPPYPALGRGDDLMAPEPRLNPDGQWPGHVGQRQSSFLPP
SSSSLPPMTTRPPPSSYQTSPAMHNHMPRAPSPGAFQRSMEARMSPNKTPFLPAMKKVGP
PLPATQVSGPPSQPPPIVRREIAFPPGTVEATQPVLKPRRKITSKDNGKCRLGAPNRSGA
TCCFTNGHSQSQYLFSFQLPGFLELIVEYFRRCLIEIFGILKEYEVGSVGQKTLLEPPPS
KKEDLPSSESEDEGAQAEGDQEEALCEEEEEEEEGPEPPEAPRPEVAEKEASAGPQEGRG
APEGEEEEKPKQASRFDRLPVKVVKREDDFVVDRSDQLGQAQEFHSGLLHWRVGGGDSTE
HIQTHFESKMELSAQRGRPGCPQSSRPEPRTRGRAETEEGGAPEEPEKRIMATIDDVLCT
RAGALPEDDPFPARAGTFPFRIHHAKSHCNIRLLEDEPRTLDEAPLSTVASWQDSLTRRC
VCVSNIVRSLSFVPGNDAEMSRHPGLVLILGKLVLLRHEHPERKRAPQTYEKEEEQDRGL
ACSKDEWWWDCLSALRENTLVTLANIAGQLDLSVYPESICLPILDGLLHWMVCPSAEAQD
PFPLAGPSSGLTPQRLVLETLCKLSIQDGNVDLLLATPPFSRQEKLYATLLRYVGERKVQ
VYREMAVAVLSNLAQGDTLAARAIAVQKGSVGNLIGFLEDGVTVAQYQQSQHGLHHLAPP
PMEPPSVNMMCRAAKALLAMARVEENRSEFVLFEGRLLDISISSVLNSAVAAVICEVLFH
IGQL
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtgacaacgtctccggcgacgactggtagtaaaaatcccaat
ttatccggcggtctgaatcaggatttaaactctgggaaatcgggagggggaacggtacag
ggatcgggagcaattctgggagttggagatggaactaacactatgaataatgtagatcac
caccaccaccaccaccaccataacgagctgagcatggccaatacaacttcttcttctgca
aataacacttcggacttgcgagagaaggagggcgtcaatagtgctgcatctttatcttct
tcaaattcggctacttcttcgagcatggagacgggtttgatagcgaatcacaaactgaaa
aatgttggtggcggagatccccctcctccgtctcaccatcacacaccgacacagccccag
ccaccacgattcagtcagttccagcagctccattcacaccaaatccaaaacaacaacatc
aacaacaacagcaacagcggcggcggcaaccaggcgcaggtaccgggggaagcggagaat
cggcaacatggagggaaagagcatattttgggaaaccaggtcgggcagcagcagccgctg
ctgaataaaagtgaagaggagggccgtgcctgcaaatcgggggatcagatgggcagcagg
tacgagcacgccaacttgggaccagcgaacaacaacaacagcagcagcaacagcaacaac
agcagccagccccaaagtgctggggggacgactagcactgttcccgagtttaataattat
tatggcaacgctagaggaggcccttgctttgatcaacatggcggacaacaaagccctggg
atggggataatgcatccttcggctcccaacagcatggattccgttcaaaactcccacgaa
gggtaccacaacagccagtacaaccactacccgagctaccgaccgggctacggcggcgca
ggctatgggatcatgagctctcccaggcaggggagtcacacgctgatgggcccaggcagc
aacagccacagcagcgctgctggccatggcaagattgctatggctgctgcctcggctcct
gggggcagcgtgggggggtttcagaggttccccgggcagagccagcacccgtccggggcc
accccgactctcaaccagctcctgacgtcccccagccccatgatgcggggcttcagcggc
ggcggctaccccgagtacagtggccccgccgcgccgccacagcagcaggcgagcgtgggg
ctgggcaaagacgcgagttcccagtacgggtccacagcccacggctggggaggacatcag
agaaatcaccctgtcatgagtcctggcaacactggacaagttatcagtagacctcaggcc
ggcgccgtggactccatggcgatgaagaggtcccagctgtacggggtgggcagtaacccg
tactcccagcagccacagcagcagcagcagcagccgccgccgcagcagagcggcacctac
cctgggcagccgtacgggtcgcccacggcacaccgctaccccatgggaatgccagggagg
agccaggctgccatgggtggagtgcagtaccctcagtcacagcagatgcctcctcagtat
agtcagcagggtatgagcgggtactgccagcagggccagcctccctacttcagccagcct
cagccgccctccgctctgacacagcctgcctacatgcagcccagagccccggcccagcag
gaggttcctcaggaaagctatgggaacagaagccagccctccatgactccggggaagccc
agccacgaggacatgaacctcatacagcaggaccggccctccagcctgcctgacctgtcc
ggctccatcgacgacctgcccacgggcaccgaggccgccctgagctcggcggtgagcgcg
tcgggctccaccagcagccagggggagcagagcaaccccgcgcagtcgcccttctccccc
cacgcctccccgcacctctccggcatgcggggggggccctccccctcgccggtgggctct
cccggcgggagcaaccagtccaggtccggccccatctcccccgccagcattccaggcagc
cagatggctcctcagacccccggtaacctgtccgacgctggctctcactctaccatgagc
cagtctcccatgtctcaggagaggggttttatgggtggcatgcagcgcaacccccccgtg
cccccctatggaccacaagggtctgggccgcccatgtccccgcacccttctcccggagca
cagatgcatcatgggttgggctcgtaccagcagggaagctccagcaacacatacggaccc
cagagcggccaatacggacctcaaggtaactacccaaggccgcccagctacgggggcacg
cccagcgctaactacagcggcccgggccccggcctgagcaacagcctggggatgaacgcc
agcagcccgatgcacggacagggcccgggccagccctgcggctccatgcccatggggcgg
gcgccaggctcggggatgtccgggcgcccttactcgggcggcatgagcaacatggctccc
agctctcccagcatgcctcagcccacgggccccgggatggggccgcctctgcccagcgtc
aaccgcaaagcgcaggaggcagccgccgccgtgatgcaggccgccgccaactccgcccag
agcaggcagagcaactattccggaatgaatcaaatgggcatgatgggctccagctcccct
tacagccagacaatggggaatagttctggaatgatgacatcacagggcccgccgtacaac
acacccccttcagggcccatgagtgtggctggggacatgatgatggctggcgacacaaag
ctgaaaggagatacgaaagaggagagcattcctgccccagagcccaaggccaaggatagc
tacagctctcagtgtatttcccagcctcccactcccgggaccctgccagtcccttccccc
ctgtcccccagccctgctagtctctcctcttatcagggagatgacagtgatagcattagc
agccccgcctggccaaagactccatcaagccctaagtccagctcttccaccgtgacgagc
gagaagatcaccaagctgtacgagatgggcaacgagcccgagcgcaagatgtgggtggac
cgctacctgtccttcatggaggaacggggcacacccgtgcccaacctgcctgccgtgggc
aagaagcccctggacctctgcaggctctacatgtctgtcaaggacattggggggctcgcc
caggtgaataaaaacaagaagtggcgtgagctgtccaccaatctcaatgttgggacctcc
agcagctcggccagctccctgaagaaacagtacatccagtatctgtttgcctttgaatgt
aaagtggagcgcggagaggagccccctcctgaaatcttcgccatgggagacaacaagaaa
caagccaagatccagccgccatctcctgccaactcggggtctctgcaaggcccccagacc
ccccagtcgagcagcagcagctccgtggcggagatgccgggggatctgaagccccccaca
ccggcctccacgcctcacgcgcccatgacgtccctgcagggcggcaggaacagcggagtg
agcgtgcaagacctcttctcggacatcggcgaccctgccttccagaagcagaactccatg
gcgcccggcgccccgttccagcagggcatgaacatgccggaggtgatgatgaggatgcag
tttgaggccaacaaggaccctttcggcggcatgaggaaagtgccaggaagcagtgaaccc
tttatgcccggacagctgcccaacagtggcatgccagacatgtacagccgcaccccctca
ggctccatgtccggactggggatgagccatcgccagcagtatccctacggccccgggtac
gagaggagacctgagcatgggattggtcctgagggcagtatgggacctcctgggaatcag
agtaacatggtgccgtctaacaacgatcccagcatgtactcgcccaaccgatatccttca
cagcaaaggcacgagccctacgggcagcagtaccccgggcagggccctcctgcggcgcag
atgccctacggcgcgcaccagccggggatgttccctcagcagcaggcttacaagcgtccc
atggatggcatgtacggccctgcagccaagcgccacgaaggtgacgtctacaacgtgccg
tatggcggccagcagcaggacgtgtacgggcagtacggcagcggctactcggggcccgag
cggcggcccctgcagagccagtacccctacccctacagccgcgaccggatgcagacttcg
gggcacacgcccccccagcccgcccagcagcatggcatttcctcccagatgctgagcggc
cccctccagcagtcttcctcctccggcccggctgaagggccccagcccaacgtgtggccc
tcgcggactgacctgccctacccctaccccggcaggcaagccccggggggctcctctcag
gtccctccctaccccgccctgggcaggggggacgacctcatggcccccgagccgaggctg
aaccctgacggccagtggccgggccacgtcggccagcggcagtcctccttcctgcccccc
tcctccagctcgctgccccccatgaccacccggccgcccccgtcctcctaccagacgtcc
cccgccatgcacaaccacatgccccgggcccccagtccgggggccttccagcgctccatg
gaggcccgcatgtcccccaacaagacgccctttctgcctgccatgaagaaagtgggacca
cccctcccagccacgcaggtcagcggaccccccagtcagccccctccgatagtacgccga
gaaatcgccttccccccgggaacagtggaagccacgcagcccgttctgaagcccagacgc
aagattacctcaaaggacaatggtaagtgccgcttgggagcgccgaaccgctcgggggca
acgtgctgcttcaccaacggacactcgcagtcccagtaccttttctcctttcagttgcct
ggattcctagaactcatagtggaatacttccggaggtgcttgatcgaaatcttcggcatc
ttaaaggagtacgaagtcggctctgtcggccaaaagactctcctcgagccgccgcccagc
aaaaaggaggacctcccctccagcgagtcggaggacgagggggcgcaggcggagggggac
caggaggaggcgctgtgcgaggaggaggaggaggaggaggaggggcccgagccgccggag
gcgccgcggcccgaggtggcggagaaggaggcgagcgcggggccccaggagggccggggt
gcccccgagggggaagaggaggagaagccgaagcaggccagcaggttcgacaggctgccg
gtgaaggtggtgaagagggaggacgacttcgtggtggaccgctccgaccagctgggccag
gcccaggagttccacagcggcctgctgcactggcgggtcggcggcggggactccaccgag
cacatccagacccacttcgagagcaagatggagctgtccgcgcagagggggcgccccggc
tgcccgcagagctcgcgccccgagcccaggacgagggggcgggccgaaacggaggagggc
ggcgcgccggaagagccggagaagcgcatcatggccaccatcgacgacgtgctctgcacc
cgggccggggccctcccggaagacgatccgttcccggcgcgcgccggcaccttccccttc
aggatccaccacgccaagagccactgtaacatcagactcctggaggacgagcccaggact
ctggacgaggctcccctgtccactgttgccagctggcaggactcgctgaccaggcgctgc
gtgtgcgtgtccaacatcgtgcgcagcctctccttcgtgccgggcaacgacgccgagatg
tcccggcacccggggctcgtgctcatcctgggcaagctggtcctgctgcggcacgagcac
cccgagaggaagagggcgccccagacctacgagaaagaggaggagcaggaccggggcctg
gcctgcagcaaggacgagtggtggtgggactgcctgtccgccctccgggagaacaccctt
gtcacgctggccaacatcgccggccagctggacctgtccgtctacccggagagcatctgc
ctgcccatcctggacggcctcctgcactggatggtgtgcccgtcggcggaggcccaggac
cccttcccccttgcggggccgagctccggcctcaccccccagagactggtgctggagacc
ctgtgcaagctgagcatccaggacggcaacgtggacctcctgctggccacgccgcccttc
agccggcaggagaagctctacgccacgctgctgaggtacgtgggcgagcgcaaggtccag
gtgtaccgggagatggcggtggccgtcctgtccaacctggcgcagggcgacaccctggcg
gcgcgggccatcgcggtccagaaggggagcgtcggcaacctgatcggcttcctggaggac
ggggtgaccgtggcccagtaccagcagagccagcacggcctccaccacctggcccccccg
cccatggagccccccagcgtcaacatgatgtgccgggcggccaaggccctgctggccatg
gcccgggtggaggagaaccgctcggagttcgtgctcttcgagggccggctgctcgacatc
tccatctcctccgtgctgaactcggcggtggctgctgtcatctgcgaagtactctttcac
attggccagttatga
DBGET
integrated database retrieval system
