Lepisosteus oculatus (spotted gar): 102684246
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Entry
102684246 CDS
T07349
Symbol
scaf8
Name
(RefSeq) protein SCAF8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102684246 (scaf8)
03041 Spliceosome [BR:
loc03041
]
102684246 (scaf8)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102684246 (scaf8)
Spliceosome [BR:
loc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
102684246 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102684246
NCBI-ProteinID:
XP_015209546
Ensembl:
ENSLOCG00000016856
LinkDB
All DBs
Position
LG1:complement(50040471..50080023)
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AA seq
1156 aa
AA seq
DB search
MEAVKAFNGELYTLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIINTFQNLYRCPADDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVIASTAAPVSNATPGTPVTPATPANIVQNLPDSWA
SQISNTDTIAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSILQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQRVSFNKKLLDQFDFGEESEHTEESKKEAPTSQIPIVSESINTSL
FHQLAEQLQQQNLEQLQKQLLEHQQQQQKTISLESQEGMFGSENSASPSQGSSQQQLQEV
EAKLDDSMDNQQQDMDLDEGQDLVDGEIFEQEDKRAVNTRSRTRSKSRSRSPRKRRSRSR
SGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKI
GSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQDTVNSEW
EAAKCAEASKESQGQSASVDPSSVASSQPDAFTQPVAMLPVQIPVAQGVPAVGLVPPAFP
VTMTMPPPGFGPPPPFLRAGFNASQPPPGYMPPPVVPPTAVGPGIPSVQTSLVQPSISAA
QEGVKDSPFGAVMPPGSTIPGSFVPPAIPGTGAFNPIGVQPQQRSSSAAEEKSAQATEKS
NASTDAKTVQGIQSDVQNASVSLLGMHPSMSLPHPLHPSHIPGQRMPGLLPLDIRPGMIP
PPPGPRFSLLMQPGLPPQPNNMPPTSMLDSSLQTRPRGPFPPLDHFSRPEGTFGRPANQT
GHSVSKSEDGRPRGNENIQQEGDQDYRFPPVEKQSAGLLRASAEQRESVNRLEGRDGVRG
APAESRENLRREPGSGFRSESRWGPPRGDFDERELRGVPVGAPKGFHDDRPGSGANFRFE
GRGGASWNRGFEPDVHRDFDDRRRPWERQRDRDDRDFDFRREMNGSRFGRERDREAWASP
QQQSLKFPEGTNENQKQDKLLRVNGEETDLKPTPEKDKLDGPEKHASPRDVDNEKNELQD
GAEIQPVVEKTETEGT
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagttaaggcgtttaacggcgagttgtacactttgaacgaatacaagccacct
atctccaaagcaaaaatgacccagataacaaagtcagctattaaagctataaagttctac
aagcatgttgtgcagagtgtggagaagttcattcagaaatgcaagccggagtataaggtt
ccagggctgtatgtcatcgactccattgtccgacagtcacggcatcagtttggtcaggag
aaggatgtgtttgctccacggttcagcaaaaatatcatcaacaccttccagaatttatat
cgatgccctgcggatgacaagagtaagattgtcagggtgttgaatctgtggcagaagaac
agtgttttcaagagtgacattattcagcccctgctggacatggccgcaggactcccgcct
cccagtgtcacccctgtgatcgccagcaccgcagcccccgtcagcaacgccactccagga
actccagttacccctgcaaccccagctaacattgtacagaatctgcccgactcctgggct
tctcagatatccaatacagacacaattgctgctgtggcgcagattctgcaaagtcctcag
ggtcaacagctccagcagttggtgcagagtctgcagatgcagcagcagaagccccagccc
tcgatactccaggctttggacgctggacttgtagtccagctccaggccctcacagcacag
ctcacggcagcggccgcagcggccaatactctcaatccgctggaacagagggtttcattc
aacaagaagctattggaccagtttgattttggggaggagtctgaacatactgaagaatct
aaaaaggaagcacctacatctcaaatccccattgtctcagagtccataaacacctccctt
ttccatcagctggctgagcagctgcagcagcagaacctggagcagctgcagaaacagctg
ctggagcatcagcagcaacaacagaagactatttctctggagagccaggaaggcatgttt
gggtcagagaattcggcatcaccatcccagggaagcagtcaacaacagctccaagaggta
gaagccaaacttgatgattcgatggataaccaacagcaggatatggatcttgacgaaggg
caagacctggtcgatggtgagatttttgaacaagaagacaaaagggctgtgaacacaagg
tcaagaacacgatcaaaatcccggtcaaggtccccaagaaaaagacggtcaagatcccgg
tctggttcacggaaacgcaaacaccggaagcgatcgcgctcccgatcgcgggaacggaag
aggaagtcctcgcggtcctactccagcgagcgcagggctcgggagcgagagaaggaacga
cagaaaaaagggctgcctcccatccgctctaaaacactaagcgtttgcagtactactctg
tgggtgggacaagtagataagaaggccacacagcaagacctaaccaacttgtttgaggaa
tttggacagattgaatccataaatatgatccctcccagaggatgtgcgtatatttgcatg
gttcacagacaggatgcgtaccgtgcccgccagaagctcagtactggttcttacaaaatt
ggctccaaagtcattaagattgcgtgggctttgaacaagggggtgaagcaggagtacaag
cagttctgggatgtagatcttggtgttacctacataccctgggagaaggtcaaggtggac
gacctggatggctttgcagaaggaggaatgatcgaccaggacactgtcaacagtgagtgg
gaggccgcgaagtgcgcggaggcgtccaaggagagccagggccagagtgcgagtgtggac
cccagctctgtggccagctcgcagccagacgccttcacgcagccggtcgccatgctgccc
gttcagattccagtggctcagggagttcccgcggtagggctggtgcccccagcgtttccg
gtcaccatgacgatgcctcctccaggttttgggcctcctcctccgtttctgagggctgga
tttaatgcttcccagccgccccctggttacatgccgcctcctgtagttccaccaacagct
gtaggacctggaattccttcagtacaaacatccttggtacagccttcgatttctgcagcc
caggagggtgtgaaggattcaccttttggagccgtcatgcctccgggtagtaccattccg
gggagctttgttcctcctgctatcccaggaactggagcttttaatcccattggagtccag
ccacagcagcgaagcagcagcgcagcggaagaaaaatcagcccaggcgacagagaagtca
aatgcctcaacggatgcgaaaacagtgcaaggaatccaaagtgatgtccagaatgcttct
gttagccttctaggcatgcacccttcgatgtccctgccacaccctctgcatccttcacac
attcctggccaaaggatgcccggattgttgcctttagatattcggcccggtatgatacca
ccccctcccggcccaaggttttcactcttaatgcagcctggactacctcctcaaccaaac
aacatgcctcccacctcgatgctcgattcctctttgcagacgaggccccgcggcccattc
cctccgctcgatcacttcagccggcccgagggaacttttggcagaccggcaaaccagacg
ggccatagtgtgagcaagtcggaggatgggagacccaggggaaacgagaatattcagcaa
gagggtgaccaggattatcgctttccgcctgtcgagaaacagagtgcgggcctcctgagg
gcttctgcagaacagcgagagagtgttaataggctcgaaggaagggatggggtcaggggt
gcgccagcagagagcagagagaacctcagaagggagcctggcagtggttttcgatccgag
agccgctggggccccccgaggggagattttgacgagcgcgagctgcggggggtgcccgtt
ggcgccccaaagggttttcacgacgacaggccaggctcgggggcgaacttccgctttgaa
ggccggggaggagcctcttggaaccgcgggtttgagcccgacgtccaccgggattttgac
gaccggcgccgcccctgggagaggcagagagaccgggacgatagggattttgacttccgc
agggaaatgaacggcagccggttcgggcgtgagcgcgaccgcgaggcctgggcatcccct
cagcagcagtcgctgaaatttcccgaggggacaaacgagaaccaaaagcaggacaaactg
ctgcgggtgaacggagaggaaacggaccttaagcccaccccggagaaagacaagctggac
ggccccgaaaagcatgcgtctcccagggatgtagacaatgaaaagaatgagctgcaggat
ggagctgaaatacagccagtggtagagaaaacagaaactgaggggacataa
DBGET
integrated database retrieval system
