Lepisosteus oculatus (spotted gar): 102684272
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Entry
102684272 CDS
T07349
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102684272 (exosc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102684272 (exosc7)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102684272 (exosc7)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
102684272 (exosc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
102684272
NCBI-ProteinID:
XP_006635603
Ensembl:
ENSLOCG00000002116
UniProt:
W5M254
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All DBs
Position
LG11:complement(2368970..2375411)
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AA seq
291 aa
AA seq
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MATVQISEAEKVYIVHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSARVKLGYSDILV
GIKAEIGRPRPMVPDEGFLEFFVDCSANATPEFEGRGGEDLGTEISNTLYKVFNNPHSVD
LRALCISPKEHCWILYVDVLLLQCDGNLYDAISVAVKAALFNTRIPRVQISEDDEGTKEI
ELSDDPYDCMRLSVENVPCIVTLCKVGQRHIVDATLQEKACSKACLLLSVTSRGTVTCVR
KIGGGSLDPESIFEMTETGKRVGKALQSPLMELLQKEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtgcagatcagcgaagcagagaaggtctacatcgtgcatggtgttcgggat
gacctgcgagtggatgggcggggctgtgaagattacagacacatggagattgaaactgat
gtagtgtccaacaccgacgggtccgccagagttaaactggggtactcggatatccttgtg
ggaatcaaagcagagattggcagaccgaggcccatggtgccagatgaagggtttctggag
ttttttgttgactgctcggcaaacgcaaccccagagtttgaagggcgagggggagaagac
ctcggcaccgagatcagtaacacgctgtacaaggtattcaacaacccccacagcgttgac
ctgcgggcgctctgtatcagccccaaggagcactgctggattctgtatgtggacgtgctg
ctgctgcaatgtgatggaaacctgtatgatgccatctctgtagcagttaaagcagccctc
tttaacacacgaattcccagagttcagatctcggaggatgatgaaggtaccaaggaaatt
gagctctcggatgacccgtatgactgcatgaggctcagtgtggagaacgtgccctgtatc
gtgacactttgcaaggttggccagagacacatagttgatgctacgctccaggagaaggcg
tgctccaaggcctgcctgctgctctcagtgaccagcagaggcaccgtcacctgcgtgagg
aagattggcggaggcagcttggatccggaaagcatatttgaaatgacagagacagggaag
cgcgtgggcaaagctctgcagtcccccctgatggagctgctgcagaaggaggagagcttg
gggaagaagaggcagaaagttggcttcctgggataa
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integrated database retrieval system