KEGG   Lepisosteus oculatus (spotted gar): 102684272
Entry
102684272         CDS       T07349                                 
Symbol
exosc7
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102684272 (exosc7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102684272 (exosc7)
Messenger RNA biogenesis [BR:loc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     102684272 (exosc7)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     102684272 (exosc7)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 102684272
NCBI-ProteinID: XP_006635603
Ensembl: ENSLOCG00000002116
UniProt: W5M254
LinkDB
Position
LG11:complement(2368970..2375411)
AA seq 291 aa
MATVQISEAEKVYIVHGVRDDLRVDGRGCEDYRHMEIETDVVSNTDGSARVKLGYSDILV
GIKAEIGRPRPMVPDEGFLEFFVDCSANATPEFEGRGGEDLGTEISNTLYKVFNNPHSVD
LRALCISPKEHCWILYVDVLLLQCDGNLYDAISVAVKAALFNTRIPRVQISEDDEGTKEI
ELSDDPYDCMRLSVENVPCIVTLCKVGQRHIVDATLQEKACSKACLLLSVTSRGTVTCVR
KIGGGSLDPESIFEMTETGKRVGKALQSPLMELLQKEESLGKKRQKVGFLG
NT seq 876 nt   +upstreamnt  +downstreamnt
atggctactgtgcagatcagcgaagcagagaaggtctacatcgtgcatggtgttcgggat
gacctgcgagtggatgggcggggctgtgaagattacagacacatggagattgaaactgat
gtagtgtccaacaccgacgggtccgccagagttaaactggggtactcggatatccttgtg
ggaatcaaagcagagattggcagaccgaggcccatggtgccagatgaagggtttctggag
ttttttgttgactgctcggcaaacgcaaccccagagtttgaagggcgagggggagaagac
ctcggcaccgagatcagtaacacgctgtacaaggtattcaacaacccccacagcgttgac
ctgcgggcgctctgtatcagccccaaggagcactgctggattctgtatgtggacgtgctg
ctgctgcaatgtgatggaaacctgtatgatgccatctctgtagcagttaaagcagccctc
tttaacacacgaattcccagagttcagatctcggaggatgatgaaggtaccaaggaaatt
gagctctcggatgacccgtatgactgcatgaggctcagtgtggagaacgtgccctgtatc
gtgacactttgcaaggttggccagagacacatagttgatgctacgctccaggagaaggcg
tgctccaaggcctgcctgctgctctcagtgaccagcagaggcaccgtcacctgcgtgagg
aagattggcggaggcagcttggatccggaaagcatatttgaaatgacagagacagggaag
cgcgtgggcaaagctctgcagtcccccctgatggagctgctgcagaaggaggagagcttg
gggaagaagaggcagaaagttggcttcctgggataa

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