Lepisosteus oculatus (spotted gar): 102684937
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Entry
102684937 CDS
T07349
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4B isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102684937 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102684937 (taf4b)
03036 Chromosome and associated proteins [BR:
loc03036
]
102684937 (taf4b)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102684937 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
102684937 (taf4b)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
102684937 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
102684937
NCBI-ProteinID:
XP_015209338
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All DBs
Position
LG9:complement(12568015..12635474)
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AA seq
886 aa
AA seq
DB search
MKYEKMTTSDVTVNHLEITKIQGEVRQTSQGDSDVTPSISVNEASCQSNGNVNVSGFKAG
LVQAHQMTPDAADVRGVLNGHVAAASAPAEAEPVTSISNPSQTLAASTYTAQPAVKPSPA
ASVVNSAPAQKSAIAPGQVTLNIINPSAAVQAPLSSTASKMALGASQLVMSSPAVISTKI
IQGSSAVAGISSQPVFTVSPPSQARVTISLAPAPRPGVPAVTSGAPAPRPGVPAVTSGAP
APRPGLPAVTSGTPASKVSRLVTFTQTPGKGAAATPKANGAPWTPQTTTVQLPANFQIPQ
GMVLIRSDGGQLMLVSQQALAQAQAQGLGLPRTAASTSSTTARAPATQTTVTAIIRKPET
TSVAKAQPQHSGAAVTSLQRIPLVKSTGGTAAAVTSVQAIRPTAPTPPAPPAVPATTPFT
AELSKPTPAAQSTFSAETLENVKKCKNFLVTLIKLSSSGARSAEMAQNVKELVKDLLDGK
IEPEEFTERLYTELKSSPQGYLVPFLKRSVPALRQLTPSSQLFIQQCEQQKPEAASVTPP
AAAVKPAPATPAKPAPLVLQQTRGVVIKQPFATVQPQSAALLQTRVLQKPPLTAAFQTSL
QQTGTVVKQALFHKPNIINVQTSLVQKTSFKENSSATFRDEDDINDVASMAGVNLSEENA
RILATNSELVGSIIRSCRDEPFLLTAILQKRILETGKKYGISDVTLDVVSLVSHAAQEHL
RELIEKLTVIAHHRKITYKDDGYVQQSDTRSQLKFLGQLDRLEKQKRDEEEREVLLRAAR
SRSNKEDPEQLRLKQKAKEMQQLELAQMQQRDANLTALAAIGPRKKRPLDSQVNGSGSEG
SSGLSAVPKSWLLQRTTRASLRDLLFCMEQQPSLRHSLALYRALLK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacgagaagatgacaacctcggatgtaacagtcaaccatttggaaataacaaaa
atccaaggggaagtacgccaaacaagtcagggtgacagcgacgtgacgcctagcatctca
gtgaatgaagcttcgtgtcagtcgaatggaaacgttaatgtcagcgggttcaaagctggg
cttgtgcaggcgcaccagatgaccccagatgctgctgatgtccgaggagttttgaatggg
catgtagctgctgcatcagctcctgcagaggcagagcctgtcacaagtatctcgaaccct
agccagactcttgccgccagcacctatacagcacagcctgcggtcaagccttcacctgct
gcctctgtagtgaattcggcccctgcacaaaagtccgctattgcccctggtcaggtaact
ctgaatattataaatccttcggcagcagtgcaagcacctctcagcagcacggcatccaag
atggcactaggtgcgagccagcttgtcatgagctcaccggctgtcataagcactaaaata
attcaaggcagttctgcagtggcaggtataagcagccagcccgtgtttacggtcagcccc
ccaagccaggccagggtgaccatcagtttggcgcctgcgcctcgccctggagtgcccgcg
gtgacctctggtgcgcctgcgcctcgccctggagtgccngcggtgacctctggggcgcct
gcgcctcgccctggactgcccgcggtgacctctgggacgcctgcctcgaaggtgagcagg
cttgtcaccttcactcagacaccagggaaaggggcagcagcaacaccgaaggccaatgga
gcaccttggactccacagaccacgactgtccagctgcctgccaatttccagatccctcaa
gggatggtgctcatcagaagcgatggtgggcagctcatgctggtatctcaacaggccttg
gcccaagctcaagcacaggggctggggctccccaggacagcggcctcgaccagctccacc
accgccagggcacctgcgactcagaccactgtaacggcgatcatcagaaagccggagact
acgtctgtagccaaagcccagcctcagcacagtggggctgctgtgacctccttacagagg
attccactcgtaaagtcgacagggggcaccgctgctgctgttacatcggttcaggcaata
aggcccacagcacccacgccgcctgccccaccggctgtccctgcgaccacgcctttcaca
gcagagctgtccaaacccaccccagctgcacagagcaccttttcggctgagactctggaa
aatgtgaagaagtgcaagaactttcttgtgaccttaattaagctgtcttccagtggagct
cgctctgcagaaatggcacagaatgtcaaggagctggtgaaagatctgctggatgggaaa
attgagccggaggagttcacggaacgactgtacactgagctgaagtcttctccccaggga
tatctagtgccttttctcaagcgaagtgtgccagccctgcgccagctgacgcccagctcg
cagctcttcatccagcagtgcgagcagcagaagccggaggcggcgagcgtcactcccccg
gcagcggcggtgaagccggctcctgcgacgcccgccaagcctgccccgttggtgctccag
caaactagaggggttgtgataaagcaaccatttgccactgtacaaccacagtcagctgca
cttcttcaaactagagttctccagaagcctcctttgactgcagcatttcagacaagtttg
caacaaacaggtactgttgtaaaacaggccttatttcataaaccgaatatcatcaatgtg
cagacctcccttgtccagaaaaccagcttcaaggagaacagctcggccactttcagggat
gaagatgacattaatgatgtggcttcaatggctggtgtcaacctcagtgaggaaaacgct
cgtatcttagcgaccaattccgagcttgtgggatcgattataagatcctgcagggatgag
ccctttctgctaacagctatcctacagaagaggattttggagactggtaagaaatatggc
atttcggatgtcacgttggatgttgtgagtcttgtctcccatgccgcacaggagcacctg
agggagctgatagaaaagctgacagtcattgcacatcatcgcaagataacgtacaaggat
gacggatatgtacaacagagtgacactcgttctcagctgaagtttctcgggcagctggac
cgtttggagaaacaaaagagagatgaggaggaaagagaagtgctcttacgagctgcaaga
agtcggtccaataaagaagatccagagcagctgaggctgaaacagaaagccaaagagatg
cagcagctggaactggctcaaatgcagcagagagatgcaaatctgacagcactggcagct
attgggcccaggaagaagcggcccctagattctcaagtcaatggatctggaagcgagggc
tcctccgggctgtctgccgttccaaagtcttggctccttcagcgaaccacaagggccagt
ctcagggatctcctgttctgcatggagcagcagccatcactgcggcactcactcgccctc
taccgtgccttgctcaagtag
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