Lepisosteus oculatus (spotted gar): 102685226
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Entry
102685226 CDS
T07349
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04110
Cell cycle
loc04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
102685226 (smc1a)
04114 Oocyte meiosis
102685226 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
loc03036
]
102685226 (smc1a)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
102685226 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
102685226 (smc1a)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_21
AAA_23
AAA_15
AAA_29
UPF0242
ABC_tran
Saf_2TM
Motif
Other DBs
NCBI-GeneID:
102685226
NCBI-ProteinID:
XP_015209440
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Position
LG1:3423553..3442492
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AA seq
787 aa
AA seq
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MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAYVSMVYCEDSGEERSFTRVIIGTPVSLEGGVTPPRLRARGER
SYSRVIIGTVPGALPECPHCLIACGHGALKLGAVAHLDDLNEPHSGVASVCALVVFTGFH
DALLCRWAKIKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRLEEELTEEVEQAKRRID
EINTELNQVMEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVEQMKAKRKEAELRQVQ
SQAHGLQMRLKYSQSDLEQTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSREREM
KELRDRMNLVEDEVFVEFCEEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQLD
YERNQLKEDQEKVQILMWSITVLVCGAVLYFQAVCLREMTQLQKEVTAIETKLEQKRSDR
HNLLQACKMQDIRLPLKSGTMEDISQEEGGSQAEESVSSSQKTSSSLLAKEALIEIDYSA
LAEDLKDAQSEDEIKAEMNNLQQRLNEQQSILQRISAPNMKAMEKLESVRDKFQETSDEF
EAARKRAKKAKQAFEQIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEE
PYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNT
NIGKVANYIKDQSVVNFQAIVISLKEEFYTKADSLIGVYPEQGDCVISKVLTFDLSQYPD
ANPAPNE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggggtatttaaaactgatagagatcgaaaacttcaagtcttacaaaggacgccagatc
atcgggcccttccacaagttcacagccatcatcggccccaatggatcggggaagtcgaac
ctgatggacgccatcagcttcgtgctggcggagaagaccagcaacctgcgcgtgaagacg
ctgaaggacctgatccacggggcgcccgtgggcaagccggctgccaaccgggcctacgtc
agcatggtgtactgcgaggacagcggcgaggagaggagcttcaccagagtcatcatcggt
acgcccgtgtctttagagggaggcgtcacgccgccgcgtctgagggcgcgaggggagagg
agctacagcagggtcatcatcggcacggtgcccggtgctctgcctgagtgcccgcactgc
cttatagcttgcggtcatggtgccttgaaactcggtgctgtggcgcacctggatgaccta
aatgagccacacagcggagtggcctctgtgtgtgcactagtagtgttcacagggtttcac
gacgcactcctctgccgatgggccaagatcaaacagaagatccgggagattgaggagaac
cagaagcgcattgagaagctggaggactacatcaccaccagtcggcagtccctggatgag
cagaagcggctggaggaggagctgacggaggaggtggagcaggccaagcgccgcatcgac
gagatcaacaccgagctgaaccaggtgatggagcagctcggcgacgccaggatcgaccgg
caggagaacagccggcagcagcgcaaggcggagatcatggagagcatcaagaggctctac
cccggctctgtggagcaaatgaaagcaaagcgaaaggaagcggagttgcggcaggtccag
tcccaggcccacgggctgcagatgagactgaagtattcccagagcgacctggagcagacc
aagacccggcacctctctctcaacatgcaggagaagtcgaagctggagagcgagctggcg
aacttcgggccccggatcaatgacatcaagaggattatccagtcgcgggagagggagatg
aaggagctgcgagaccgcatgaacctggtggaggacgaggtgttcgtggagttctgcgaa
gagatcggcgtgaggaacatccgcgagttcgaggaggagaaggtcaagaggcagaatgag
atcgccaagaagcggctggagtttgagacccagaagaccaggctgggcatccagctggac
tacgagcggaaccagctgaaggaggaccaggagaaggtgcagatactgatgtggagcatc
actgtgctggtgtgtggtgcagtgttatatttccaggctgtgtgcctcagggagatgacc
cagctgcagaaggaggtgacggccatcgagaccaagctggagcagaagcgcagcgacaga
cacaacctgctgcaggcttgcaagatgcaagacatcagactgcccctgaagtctggcacc
atggaggacatcagccaggaggaggggggctcccaggcggaggagtcagtgagcagcagt
cagaagacgtccagcagcctgctggccaaggaggctctgatcgagatcgactacagcgct
ctggccgaagacctgaaggacgcccagtcggaggatgagatcaaggcagagatgaacaac
ctgcagcagcgcctgaacgagcagcagagcatcctgcagcgcatcagcgcccccaacatg
aaggccatggagaagctggagagcgtccgcgacaagttccaggagaccagcgacgagttt
gaggcagcccgtaagcgagcgaagaaggccaagcaggcttttgagcagatcaagaaggag
cgcttcgaccgtttcaacgcctgcttcgagtccgtggccaccaacatcgacgagatctac
aaggccctgtccaggaacagcagtgctcaggcattcctgggcccagagaacccagaggag
ccttatctggacgggatcaactataactgtgtcgctccggggaagaggtttcggcccatg
gacaacctgtctggcggggagaaaactgtagctgccctagcactgttgtttgccatacac
agctacaagccggctcccttcttcgtgctggatgagatcgacgctgctctggacaacacc
aacatcgggaaggtggcaaactacattaaggaccaatcggtggtgaacttccaggccatc
gtcatctccctgaaggaggagttctacaccaaggccgactcgctcatcggcgtataccct
gagcaaggagactgcgtcatcagcaaagtgctcaccttcgacctgtcccagtaccccgac
gccaaccctgcccccaacgagtaa
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