Lepisosteus oculatus (spotted gar): 102686201
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Entry
102686201 CDS
T07349
Symbol
blm
Name
(RefSeq) Bloom syndrome protein isoform X1
KO
K10901
bloom syndrome protein [EC:
5.6.2.4
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03440
Homologous recombination
loc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102686201 (blm)
03460 Fanconi anemia pathway
102686201 (blm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
loc03032
]
102686201 (blm)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102686201 (blm)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102686201 (blm)
DNA replication proteins [BR:
loc03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
102686201 (blm)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
102686201 (blm)
Bloom's syndrome complex (BTR)
102686201 (blm)
FA (Fanconi anemia) pathway
102686201 (blm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BLM_N
DEAD
BDHCT
RecQ_Zn_bind
Helicase_C
HRDC
RQC
BDHCT_assoc
Motif
Other DBs
NCBI-GeneID:
102686201
NCBI-ProteinID:
XP_006629037
Ensembl:
ENSLOCG00000014302
UniProt:
W5NAF0
LinkDB
All DBs
Position
LG3:complement(47259999..47276037)
Genome browser
AA seq
1481 aa
AA seq
DB search
MQALPQNNLQKQLELHSSKAVQNRLSLNKPRSGTFSFKKKSASGITKVAVLPKVTVSNAL
VDRDVNAFHHSKVTKPLTSLNKPEEQQARINSFFELTHKAKSQNFTPVVTRPAVSNIKLS
LSTTKASPQSALVNTDVGKKDDSEKTALNNSLSVSIDDWDDFDDFDFGTPVKDKSVTRLS
QSNSGENFKKESASNLNKPCLKTSRAAEKILSESSDHNISNGLQNQEEPLEAQNGPAALP
VQCRPLPDAFAAVEKPQGCVEDKEEEDDVPIKFARKRHLSQIAQILSDSEDDCVEEGDFP
NKKKGLQSKQIDTPIAEIENRSENDNEELDFVPPSPESETISPLLMKQPFSGAETHESSY
NGHFSSKELVSKQQKHETADDGDSEEIKISGTDSENQLFSIMEEICQLVDSIPEHELTAL
SCGRDLLFQRARRRRFFAESCRTPQAPRWTGSHEASNAKTDNQWSHFKTPVSHSSSFKTI
PSGKDQSSAKSFRFRKPSSVPFADGDGSVFEESDLSDTGGIQSPSPSYRPRGVPNVSFNG
ESDSRKEKLGVGNNGKDSRSDTFYSKFPSFSSASNQMPNLEETDDCVCLADTPSLRIQNK
TNTPASDSYGVDPSLDDIDNEFTFDNFDIDDFDEEDMGDYFEGNDSASKKQGTEGVQPVR
EGHPSKSLWEKKSPSSSFSSSAAKPSKPTSECSLPEPINRNPAHDRFRGCNFPYSQEMMK
IFNKRFGLRQFRTNQLEAINATLHCEDTFVLMPTGGGKSLCYQLPACVSPGVTIVISPLR
SLIVDQVQKLTTLDIPAAGLTGFKSDSESARVYMQLSKKDPIIKLLYCTPEKVCASNKFI
SALRNLYERSLLSRIVIDEAHCVSQWGHDFRPDYKRLHELRRMFPSVPIMALTATANPRV
QKDILNQLQMLKPQVFTMSFNRHNLKYAVLPKKPKKIAEDCLEWIKKYHPRDSGIIYCLS
RNNCDSMAESLQRGGITALAYHAGLKDSDRDYVQQKWIEQDECQVMCATIAFGMGIDKPD
VRFVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYNDAIRIKRLINMERDGNKETKQ
THITNLYSMVHFCENVVECRRTQLLAYFGERTFNPNFCKEHPDVTCDNCARAKLYKSRNV
TEEVKNVVRFVQEHCAKVGVRQAKSAQLNRLTLNMLVDIFIGTKSARIQTGLYGKGAAYS
RHNAERLFRKLVLENVLEESLYITANDQAVAYISAGQKAAAVLSGFMQIEFYDTESASSI
KKQRASVTKNMSKREEMVQNCLQELNDLCKKLGKIFGIHYYNIFSTATLKKIAETLSADP
EVLLQIDGVTEDKLEKYGAELIQLLQKYSDWQLPVEEHTEKPVGNDGWIDVERNRREEQE
LCDEDAGGSSYFKSTSERGGKRKKPSYFNKAKRRKGGYNSSTKGNNARASSTASKGGSKD
RGQDSAGSSKPAMATKRPGFMAPPVPRSNQRPFLKPAFSHM
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctcttccgcaaaataacctacagaaacagctggagctgcattccagtaaagct
gtgcagaacaggctgtccttaaataaacccagatcagggactttttcttttaaaaagaaa
tctgcttcggggattactaaagttgcagtcctccccaaggtaacagtttctaatgcttta
gtggacagggatgtcaatgcattccaccatagtaaagttactaaacctctgacatcttta
aacaagcctgaagaacagcaagcaagaatcaacagtttctttgagctgactcacaaagcc
aagtcacagaactttacacctgttgtaacaagacctgctgtgagcaatatcaaactaagt
ttgtccactacaaaagcttctccgcagtcagctctggtgaacacggatgttggaaagaaa
gatgacagcgaaaagacagcgttgaataactcccttagcgtcagtatagatgactgggat
gattttgacgattttgactttggtactcctgttaaagacaaaagtgttacacggctgagc
cagagtaattctggagagaactttaaaaaggaaagtgcctcaaatttaaataaaccgtgt
ctgaaaactagcagagctgccgaaaagattctgtctgagtcttcagatcacaacattagc
aacgggcttcagaatcaagaggaaccgctcgaagcccagaacggccctgcagctctgcca
gtccagtgcagacctttaccagatgcctttgctgctgtcgagaaacctcaggggtgcgtc
gaggataaggaagaggaagatgatgttcccataaaatttgcaagaaaaagacatttatcg
caaattgctcagatattgagtgacagtgaagatgactgtgttgaggagggagatttcccc
aataaaaagaaaggtttgcagagtaagcagatagacacccctattgcagaaattgaaaac
aggtctgagaatgacaacgaggaacttgattttgtccctccatctcctgagagtgaaacc
atttctccactgcttatgaagcagcctttcagtggagctgagactcatgaatcaagttac
aatggacacttttcatcaaaggaattggtttccaagcaacagaaacatgaaacagctgat
gatggagattctgaagagataaaaatcagcgggacagattcagaaaatcagctgttcagc
atcatggaagagatatgtcagctggtggactcaatacctgagcatgagctgacagcactg
tcgtgtggtagagatctccttttccagcgggctcgtaggagaaggttttttgcagaatca
tgtcgaacaccacaagcgccaagatggaccggcagtcacgaagcctccaacgccaaaact
gacaaccagtggtctcacttcaagaccccagtttcccactcttcctcattcaaaaccatt
cccagtggaaaggatcaatcctctgcgaagtctttccgtttcaggaaaccctcctccgta
ccttttgcagacggtgacggaagtgtgttcgaggagtccgacttgagcgataccggtggg
attcagtctccgagtccctcttataggccgaggggtgtccctaacgtgagttttaacgga
gaatctgactctcgaaaggagaaacttggcgtcggcaataatggtaaagattctcgttca
gacaccttttattcaaaattcccctccttcagcagtgccagcaatcaaatgcccaacttg
gaagaaactgacgactgtgtctgtctagcagatacgccttcgctcagaattcagaacaaa
acaaacactcccgcctcggactcctacggtgtggacccatctttggatgacatcgacaat
gagttcacctttgataactttgacatcgatgactttgatgaggaagacatgggggattat
tttgaaggcaacgattctgcctccaagaagcagggcactgagggggttcagccagtaaga
gaagggcaccccagcaaatcactgtgggaaaagaaaagtccttcttcgtctttctcgtct
tcagctgccaaaccctcgaagcctacgtctgaatgcagtctgccagagcccataaacaga
aacccggcacatgatcgcttcaggggatgcaacttcccttattcacaggaaatgatgaag
attttcaacaagagatttggtcttcgtcagtttcgaaccaaccagctggaagccatcaat
gccacgctgcattgcgaagacacatttgtactgatgccaactggaggtggtaaaagtctt
tgctatcagctccctgcctgtgtgtctccaggagtaaccattgttatttctcctctccgg
tctctgatagttgaccaggtgcagaaactcacaacattggatattcctgccgcaggttta
acaggattcaagagtgacagtgaatctgcaagagtttacatgcagctgtcgaagaaggat
cccatcattaaactcttatattgcaccccagagaaggtttgcgcaagtaacaagtttatc
agtgcccttcggaatctgtacgagaggagtctcctctcgcgcattgtcatcgatgaagct
cactgtgttagccagtggggccatgacttccggccggactacaagcggctgcacgagctg
cggcggatgttccccagcgtgcccatcatggcgctgacggccacggccaacccccgagta
cagaaggacatcctcaaccagctgcagatgctgaagccacaggtttttacaatgagcttc
aacagacataacctaaagtatgcggttttgcctaaaaagcccaagaagattgctgaggat
tgccttgaatggatcaagaaataccacccacgtgattctgggattatttactgcttatct
cgaaacaactgtgattccatggctgaaagcctgcagagaggtggaattacagctttagca
tatcatgctgggttgaaggacagtgacagggattatgtacagcagaaatggattgagcag
gatgagtgccaggtaatgtgtgctaccattgctttcggaatgggcatcgataaaccagac
gtgcggtttgtgattcacgccagcctgcccaagtctgtggaagggtattaccaggagtca
ggcagggctggcagggatggtgaaatctcccattgtgtccttttctactcttacaatgat
gctattcgaatcaagcggctcataaacatggagagagatggcaacaaggagaccaagcag
actcacatcaccaacctgtacagtatggtgcatttctgcgagaatgtggtcgagtgccgg
cgaacacagttgttggcatacttcggggagcgcacatttaaccccaatttctgcaaggag
caccctgatgtcacctgtgacaattgtgccagagctaaactatacaagtcaaggaatgtg
acagaagaagtgaagaacgttgtaagatttgttcaggaacactgtgcaaaggttggcgtg
agacaggccaagtcagcgcagctgaacagactgactcttaatatgctagtggatattttc
attggtacgaaaagtgcccgtatccaaacgggcttgtatggtaagggagcagcctattcc
aggcacaatgccgagagactcttcagaaagctggtgctggaaaatgttttagaggaaagt
ttgtacatcacagccaatgaccaagctgtggcatacatctccgcaggccagaaagctgca
gctgttctcagtggcttcatgcagatagagttctacgacactgaaagtgcctccagcatc
aaaaaacaaagggcgtcagtgaccaaaaacatgtcgaagcgggaagagatggtccagaat
tgccttcaggagcttaacgatctgtgcaagaagctgggaaaaatctttgggatacactat
tacaatatattttctactgccactctaaaaaagattgcagagacattgtccgctgatcct
gaagttctccttcagattgacggagtgacagaagacaaactggaaaagtatggagctgag
ctgattcagcttcttcagaagtactccgattggcaactgcctgtggaggagcacacggag
aagccagtcggcaatgatggctggattgatgtggagaggaacagaagggaggagcaggag
ctctgcgatgaggacgcaggagggtccagctatttcaagagcacaagtgaaaggggaggc
aagcgaaagaaaccttcctatttcaacaaggccaagaggagaaaaggaggctataattcc
tccaccaaaggcaacaacgctagggcatcatccacagcttccaaaggtgggtctaaagac
agaggtcaggattcagctggaagctctaagccagcgatggccaccaagagaccaggcttc
atggcaccaccagttccacgatccaaccagcgtccctttctgaagcctgctttttcacac
atgtga
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integrated database retrieval system
