Lepisosteus oculatus (spotted gar): 102686252
Help
Entry
102686252 CDS
T07349
Symbol
sdc1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04512
ECM-receptor interaction
loc04514
Cell adhesion molecules
loc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102686252 (sdc1)
04514 Cell adhesion molecules
102686252 (sdc1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102686252 (sdc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
loc04131
]
102686252 (sdc1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
loc04090
]
102686252 (sdc1)
00535 Proteoglycans [BR:
loc00535
]
102686252 (sdc1)
Membrane trafficking [BR:
loc04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
102686252 (sdc1)
CD molecules [BR:
loc04090
]
Proteins
102686252 (sdc1)
Proteoglycans [BR:
loc00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
102686252 (sdc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Glypican
Motif
Other DBs
NCBI-GeneID:
102686252
NCBI-ProteinID:
XP_006626435
Ensembl:
ENSLOCG00000017195
UniProt:
W5NKU3
LinkDB
All DBs
Position
LG1:complement(62448661..62470806)
Genome browser
AA seq
357 aa
AA seq
DB search
MRMHNTAVLLLCLGLWIPVALSNSIPPEDLDGSSDDEDFSGSGDGTVFDTPTPSEDELHL
NVTATPVVLKTTESPKLHEAEEQRTTSLAPVSSSKVTTMPVSTASPDTTVMPQIPVQEPT
SAKPETTTRDVASPPIVDVATSAPSAADTPRGSTTAEMDFPHSEDLEPTTAAHSSSATLP
SDDQSADPFVKGTSVVTVAAPSQPPTTAGAEDVTFREDSVLSSTIPVHTTQPSIELIPEN
EIHPNPRMVNTEIHSILATIKPEKPIEKVDSDIYFAEERPLDSETSEQAASEGLLENKEV
LAGVIAGGIIGLAFAVLLVALMVYRMKKKDEGSYALDEQKHSNGGYQKPQKQEEFLA
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgaggatgcataacactgcagtgctgctattgtgtttgggattatggattcctgttgcc
ttatcgaattcaattcctcctgaagacctggatgggtcatcagatgatgaagatttctct
ggttctggagatggcactgtgtttgataccccaactccctctgaagatgagcttcatttg
aatgtcactgcaactcccgtagtcttgaaaacaactgaatccccgaaattacacgaggct
gaagaacaaaggaccacatcattggctcctgtttcatcgagcaaagttacaaccatgccc
gtctctacagcatctcctgataccacggtgatgccacagatccccgttcaggagcccacc
tctgccaaaccagaaacaacaacccgggatgtcgcctcccctcctattgtagatgtggcc
acctctgcgcccagtgctgcagacacccctcgtggcagtactactgctgaaatggatttc
ccacattctgaggacctcgagcccactactgcagctcacagctcttcagccactctcccc
agcgatgatcaaagtgctgatcctttcgtgaaggggacttccgtcgtcactgtggctgca
ccttcacagccgcctaccactgctggagccgaagatgtgaccttcagagaagactcggtc
ctgtcttccaccatccccgttcacaccacacagccctccatcgagctaattccagagaat
gaaattcatccgaatcccagaatggtcaacacggaaatacattccattttggccacaatc
aaaccggaaaaacccatagaaaaggttgattctgacatatactttgcggaagagcgtcct
ttagactctgaaacatcagaacaggctgcaagtgaaggactcctggaaaacaaagaggtg
ctggcaggtgttatcgctggtggaatcattggtcttgcatttgctgtactgcttgtagcc
ttaatggtgtacaggatgaagaaaaaggatgaaggaagctatgctctggatgaacagaaa
cattctaatgggggctaccagaaaccacaaaaacaggaggagtttcttgcataa
DBGET
integrated database retrieval system
