KEGG   Lepisosteus oculatus (spotted gar): 102686264
Entry
102686264         CDS       T07349                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102686264 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102686264 (exosc1)
Messenger RNA biogenesis [BR:loc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     102686264 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     102686264 (exosc1)
SSDB
Motif
Pfam: ECR1_N EXOSC1
Other DBs
NCBI-GeneID: 102686264
NCBI-ProteinID: XP_015201713
Ensembl: ENSLOCG00000003776
LinkDB
Position
LG5:4495172..4499278
AA seq 128 aa
MSPKTLCVPGERLCSTEECVPGPGTYLRHGYIFASLAGYVLRKNAGEEVEIYKSFRPGDI
VLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGEQMVPISWCEMQCPRTHAKEFRKVAR
VQPEYLQA
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtctcctaagacgctgtgtgtgccaggagagaggctgtgcagcacagaggagtgtgtc
ccggggcctggaacgtacttgcgtcatggctacatctttgcctccctcgctggttatgtg
ctgaggaagaacgcgggagaggaggtggagatctacaagagtttccgaccaggagatatc
gttctagccaaagttatctccctaggtgatgtccagtccaactatcttctcaccacagcg
gagaatgagctgggagtggtggtagcacatagtgaagcaggtgagcagatggtgccgatc
agctggtgtgagatgcagtgtccgcggactcatgccaaggagttccggaaggtggcgagg
gtacagccggagtacctccaggcgtga

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