Lepisosteus oculatus (spotted gar): 102686362
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Entry
102686362 CDS
T07349
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102686362 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102686362 (bard1)
04121 Ubiquitin system [BR:
loc04121
]
102686362 (bard1)
03036 Chromosome and associated proteins [BR:
loc03036
]
102686362 (bard1)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102686362 (bard1)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102686362 (bard1)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102686362 (bard1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
102686362 (bard1)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
102686362 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
Ank_4
Ank_3
Ank_5
zf-RING_6
BRCT
BRCT_2
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
102686362
NCBI-ProteinID:
XP_015214147
Ensembl:
ENSLOCG00000004470
LinkDB
All DBs
Position
LG12:7864360..7884711
Genome browser
AA seq
806 aa
AA seq
DB search
MRGNWTAILRSHSGNEAARRSMDRRLSPQAEAGSWTRTRQSVEQLRSLLLCCRWTCAVGC
VSEGCSVCHTPVWLTDLQINRQLDSITQHVHKLESLLHCGGAASPQAGPAARSLGRHRKN
FRIWFSPRSRKVRCRLERGGSGAPDAQAEAGRPAGPAEASVFDFAASSSSQSSAEGRKRK
HGARPATRGKPKGGVSKRQRLKRVNREWGVQTARGPGAKAAEEEEEEGLEGKQVTSKKAV
SFLAPDVVRGAGDPEGPRAGPSQREGARRSSLRVAVRAPQTGRDGAEEPAPSPGPAGEPA
PLPPQGTGSAGEGAPLRPRRGTRSSAQGSPRTPWRSPGCRAGASSSPPPAGPCVPPVPKK
ARVGPESGAGGEGGREPAPHSPRRRAPLRRGSSASPGQAAPPGRLAAMKKNFKGETPLHL
AAIKGDVQAVQELLSSGTDPNLKDHAGWTPLHEACNHGHLPVVEVLLQQGALLNTPGYQN
DSPLHDAVRNGHTLVVGLLLEHGASQDVVNIFGLRPADYAETPEMKALLQATPQGTPTPL
QSPKTSLSKVRGFGSVTVLGSKLTKPQLAQLSRLGRVLGVGQAESFTSAVTHVVVADGPM
PTTLSCLLAVLNGCWILKFQWVEHSLKAGTLAPESDYEVGEGAQRSRVNRENMLPRLFDG
CFFFLRGSFRRPPRDELLRLAREGGGRVLLRQPKPDSDVTQTVAAAAYHAPPGSDQRSCT
QYVLYDRGSAYRPPRVRLGKVWSAPSAWLLDCIAAFRLLPVPEPEPQPPGPLRAPSRGFP
AAHHTTVHETQVANARISPGSVPLDL
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagagggaactggacggcgattctgcggagtcactccgggaacgaagcggcccgcagg
tccatggaccgccggttgtccccgcaggccgaggccgggagttggacgagaacccgccag
tcggtcgagcagctgcggagcctcttgctgtgctgcagatggacatgcgctgtcgggtgt
gtgagcgagggctgcagtgtgtgtcacaccccggtgtggctcacagacctgcagattaac
cggcagctggacagcatcacccagcacgtccacaagctggagtccctgcttcactgcgga
ggtgcagcttccccgcaggctggccctgcggcccgatccctcgggaggcacaggaagaac
ttcagaatctggttcagcccgcggagccgcaaggtcaggtgccggctggagaggggaggg
agcggagccccagacgcgcaggcggaggccggccgcccggcgggcccggccgaggcctcc
gtcttcgacttcgccgcctcttcctcgtcccagagctcggctgagggcaggaagaggaag
cacggcgccagacccgcaacccgggggaaaccgaagggcggggtcagcaagaggcagagg
ctgaagcgcgtcaaccgggagtggggcgtccagaccgcacggggccccggggcgaaggca
gcggaggaggaggaggaagagggactggagggaaagcaggtgacgtccaagaaagctgtg
tccttcctggccccggatgtggtccgcggtgctggagaccccgaggggccgcgggctggc
ccttctcagcgggaaggagcgaggaggtcctccctgcgggtggccgtgagggctccacag
accggtcgagacggggcggaggagcccgctcccagcccgggcccggcgggagagccggcg
ccgcttccgccgcaggggacaggctccgcgggcgagggcgcccccctgaggccgaggcgg
ggcacgcgctccagtgctcagggctccccgagaacaccctggaggtcccccggctgccga
gccggcgcctcctcttccccgccacccgcaggtccctgcgtgccgcctgtccccaagaag
gccagggtgggcccagagtccggcgcgggaggggagggtggcagggagcccgcgccacac
tcgccgaggaggagggcgcccctgaggcgggggtcttcggcctcccctgggcaggcggcg
ccccccgggagactggcagcgatgaagaagaacttcaaaggagaaacccccttgcacttg
gcagctataaagggagatgtgcaggctgtgcaggagctgttgagcagtgggacagacccc
aacctgaaggatcatgctggctggactcccctgcatgaggcctgtaaccatggacacctg
cctgtagtggaggtgctgctgcagcagggggcgctgttgaacacaccggggtaccagaac
gactcgccgctgcacgacgcggtcaggaacggccacacgctcgtcgtcgggctgctgctg
gaacacggcgcctcgcaggacgtagtgaatatcttcggcctgcggcctgccgattacgcc
gagacgcccgagatgaaggccctcctgcaggcaactccccaggggaccccaaccccactg
cagagccccaaaaccagtttgagcaaggttcgaggatttgggtccgtgacggtgctgggc
agtaagctgaccaagccccagctggcacagctctccaggctgggcagagtcctgggagtt
gggcaggcagagagcttcaccagcgcggtgacccacgttgtggtcgcggacggcccaatg
cccaccactctgagctgcctgctggctgtgctgaacggctgttggatcctgaagtttcag
tgggtggaacactctctcaaggctggtacccttgccccggagagcgactatgaagttgga
gagggggcccagcgcagccgtgtgaacagagagaacatgctcccccggctcttcgacggc
tgcttcttcttcctgcgcggctcgttccggcggccccccagggacgagctgctgcggctg
gcgagggagggcggcggccgtgtgctcctgcggcagcccaagcccgacagcgacgtgacg
cagaccgtcgccgcggccgcctaccacgcgccgccgggctcggaccagcgctcctgcacg
cagtacgtgctgtacgaccgcggctcggcctaccgcccgccgcgcgtccgcctgggcaag
gtctggtccgccccctcggcctggctcctggactgcatcgcggccttccgcctcctcccc
gtgcccgaacccgagccccagcccccgggccctctgcgcgcgccgagccgaggtttcccg
gcggcacaccacaccacggtgcatgaaactcaggtggcaaacgctcggatctcacccggg
tccgtccccttggatttatga
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integrated database retrieval system
