Lepisosteus oculatus (spotted gar): 102686583
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Entry
102686583 CDS
T07349
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102686583 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102686583 (edc4)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102686583 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
102686583 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
WDR55
Pdc1_Ge1
EIF3I
PIN_8
Motif
Other DBs
NCBI-GeneID:
102686583
NCBI-ProteinID:
XP_006641463
Ensembl:
ENSLOCG00000006715
LinkDB
All DBs
Position
LG23:complement(13327971..13350760)
Genome browser
AA seq
1403 aa
AA seq
DB search
MASNSNIDIEDATQHLRDILKLARPGISDTSSTENPKRSFNGELNGLFGADFVAAGDRAT
LGEPTAHNPESMSSHERQTICLSGDDSSTCIVISSGDVEVVASHDSSINSKARGSNKVKI
QPIAKYDWEHKYYYGNLIAVSNSFLAYAIRGANNYPMIRVLSLSTAERTLLKGFTGAVTD
LAFAHLNSTQLACVDEAGNLFVWQLTSQDGKIQDEIIVHITRPEGTPLNTNRRIIWCPFI
PEENDDNAEDGCQTLALLHEDRAEVWDLEILRTSNTTWPVEVTDLKDGFITVKGHTERIS
EGALSPDGTVLATASHDGYIKFWQIYIEGQGQPRCLHEWKPHNGKPLSCLLFCDNHKKQD
PDVPFWRFLVTGAEQNRELKMWCTVSWTCLQTVRFSPDPFNSSVLPSLKASLDLSAEYLI
LSDVQRKVLYVMELLQDQEKGRASFTAISEFLLTNPVLSFGIQDVSRSRLRHTEVLPPEE
ESESMTSEGSQGPVESKAGVQIKLYCVHTKSLQDVQIWFQPHHQQSPGSSLFLPRAGSCE
DFGFTDHLRDVSGEGLGSDKESGRGSQHDLRRISNLPAPADFLSPSNDVKPKLMTPDAFM
TPSASAQQQIATSPGSSGTTLTTVTAMSSTSISESVMSRSGEELTQSPMISLEGSITPSG
SSAISGLPPSPRSNSILIPGLTDQLPTKTIQVSPAANPPLSLDLQTIEPLLVPQASPTRE
RSPDVISSASTAMSQDIPEIASETLPRGLGSAGGLAGEPRDPSLHDDSMASAASALHLLS
PRNRHNSEHSARSLELGPGPGELLGCTPSLLETALSQESAAASAADSGASQPWPAAPDIT
RETRISLADCSREDMKEKHKTSPFHRHTYHLPQHDSQDASAEQSDHDEEVASLASSTGNY
GPKPSHRLPVKEWKVSPRSSPKLKRKSKKDDGDAAQSRQADHQMNPEMQEELLSLVRSQQ
REISELRQSQMELMQRLTNHMDAVQSSIMGHVERVMVSQQEQEQRRMERMVAEEHDRSRQ
LQEHLAQQLSQALGNTLSNRLDKIVRDEMKKTVPQTVSKSLEPVTGQLSNTIAAKLTAVE
GILKESVTKMVKSKNTTDAIGKAAAEALQGPIQAAYREAFQSIVLPVFEKGCQSMFQQIN
DSFKQGTHEYIQQLESHLKNKKLRDHEARDPLVGQLQQTLDAFQNSTDQLTSNVTASVRS
EVQHQLHVIVGNLQDSILTQVQRIVKGEVGMAMKEQQAVVTSSIMQAMRSAAGTPIPTSH
LDYQSQQANILQMLQQGQLNQAFQQALSAADLNLVLYVCETVDSQQVFGQHPCPLIQPVL
LSLIQQLSTNLATRTELKISYLEDAVMNLDHSDPVTRDHMSSVLAQVRQKLYQYLQLEPH
SPLSKRARRLMMMLQGLVNHGMS
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcttctaactccaatatagatatagaggacgcgacccagcatcttcgggacatcttg
aagctggcccgacccgggattagcgatacctcttcgactgagaacccaaagaggtctttc
aacggggagctcaatggcctgtttggcgctgacttcgtagccgcgggtgaccgagctacc
ctgggcgagcccactgcgcacaacccggagagcatgagctcgcacgagagacagaccatc
tgcctctcaggagatgacagttcaacctgtattgtcatttcatctggggatgtggaggtc
gtggcaagccatgactccagcatcaacagcaaagccaggggcagcaacaaggtcaaaatc
cagcctattgcaaagtatgactgggaacacaagtactattatggcaacctgatagcggtg
tccaacagtttccttgcctatgccattagaggtgcaaacaattaccccatgatccgagtg
ctgtcgctgagcacggccgagcgcacgcttctcaaaggattcacgggggctgtcacagac
ctggcctttgctcacctcaactccacccagctcgcctgcgtggacgaagctggcaacctg
tttgtgtggcagctgaccagccaggatgggaaaatacaggatgagataattgtccacata
acgaggcccgaaggcactcccttaaacaccaacaggaggatcatttggtgccctttcatc
ccagaggagaatgatgacaatgcagaggatggctgtcagacactggccttgctccatgag
gaccgggcagaagtgtgggatttggagatcctccgaacgagcaacaccacctggccagtg
gaagtgactgatctgaaggatggctttatcactgttaaaggacatacagagcgcatcagc
gaaggcgccttgtcccctgatggcacagtccttgccactgccagtcacgatgggtacatc
aaattctggcagatctacatcgaagggcagggtcagccaagatgtcttcatgaatggaag
ccccacaatgggaagcctttatcctgcttgctgttttgtgacaatcacaagaaacaagac
ccagatgttccattctggaggttcctcgtcactggagcagaacagaatcgagagctgaag
atgtggtgtactgtgtcctggacctgtttgcagaccgtcagattttctccagatcctttt
aactccagcgttcttccgagtctgaaagcaagtttggatctctctgctgagtacttgata
ctcagtgatgttcaaagaaaagtgctgtatgtgatggagctactgcaggatcaggagaag
ggcagagccagcttcactgccatctcggagttcttgcttaccaacccagtgctcagcttt
ggcattcaggatgtgagccgcagccgcctgcgtcacactgaagtccttccccccgaggaa
gagagcgagagcatgacctcagaaggaagccaaggacctgttgaatccaaagcaggagtc
cagatcaaactgtactgtgtccacacaaagtccctgcaggatgtgcagatttggtttcag
cctcatcatcagcagagtcctggcagttccttgtttcttcctcgtgctggttcgtgtgag
gacttcggttttacagatcacctgcgggatgtgagcggggaaggcctgggatcagacaaa
gagtcgggccgggggtcacagcacgacctgcgcaggatctccaacctgcctgccccagct
gacttcctgtccccgtccaatgatgtcaagcccaaactcatgacgcctgatgcctttatg
actcccagtgcttcagcgcagcagcaaattgccacgtctcctggcagcagtggcacaacc
ctcaccaccgtgacagccatgagcagcacctccatcagtgagagtgtcatgtccagatcg
ggagaggagctgactcagagccctatgatctccctggagggcagtattaccccgagtggc
agcagcgccatctctggtcttccacccagcccacggagcaactccatcctcattcccggg
ctcacagaccagctgccaaccaagactatccaggttagccctgcagccaatccgccgctc
tccctggacctccagacgatcgagcctctcttggtgcctcaggcgtctccgacccgagag
cgctctcccgacgtgatttcctcagcgtccacggccatgtcccaggacatcccggagatt
gcctcggagacgctgccgcggggcctgggctcggcgggcggcctggccggggagccccgg
gaccccagcctgcacgacgacagcatggcctccgccgcctccgcgctgcacctgctgtcc
ccccgcaaccgccacaactcggagcacagcgcccgctccctggagctgggccccggcccg
ggcgagctgctcggctgcacgccgtcgctgctggagaccgccctgtcccaggagagcgcc
gcggcctcggcggccgacagcggcgcgagccagccctggccggcggcccccgacattacc
cgggaaaccaggatcagcctcgcggactgctctcgtgaagacatgaaggagaagcacaag
acctctccattccatagacacacctatcacctcccccagcacgacagccaggatgcaagt
gcagagcaaagtgatcacgatgaggaagttgctagccttgcgtcttccacaggaaactat
ggtcccaaaccctcccacaggttacctgtaaaagaatggaaagtctccccaaggagttct
ccaaaattaaagagaaagagcaaaaaagatgatggcgatgctgcacagtccaggcaagca
gatcatcagatgaatccagagatgcaggaggagctgctgtccctggtgcgcagccagcag
agggagatctcggagttaaggcagagccagatggagctgatgcagaggctcaccaaccac
atggatgccgttcagagttctatcatgggccatgtggagagagtcatggtctcccagcag
gagcaggagcaaagaagaatggagcgaatggtggcagaagagcacgaccgcagccggcag
ctgcaggagcacctggcccagcagctctcccaggctctcggcaacacgttgtccaaccgg
ctggacaagatcgtccgagacgagatgaagaagaccgtcccgcagactgtatcaaagagc
ctggagccagtcacagggcagctgagcaacacaatcgcagccaagctgactgcagtggag
ggaattctgaaggagagtgtcacgaaaatggtgaagtcaaagaacactacagatgccatt
gggaaagcagcggctgaggctttgcagggtcctatacaggctgcatacagagaggctttc
cagagcatcgtgctgccagtgtttgagaagggctgccagtccatgttccagcagatcaac
gacagcttcaagcaggggacacacgaatatattcagcagcttgaaagccacctgaagaat
aaaaaactgcgggaccacgaggcccgggacccgctggtgggccagctgcagcagacgctc
gacgcattccagaactccaccgaccagctgacctccaacgtcacggccagcgtgcgctcc
gaggtccaacaccagctccacgtcattgtgggaaacctgcaggactcgatcctcactcag
gtgcagcgcattgtgaaaggagaggtgggcatggccatgaaggaacaacaggcagtggtg
acctctagcataatgcaggccatgcgctctgctgctggcacacccatccccacctcacac
ctggactatcagagtcagcaggccaacatcctgcagatgctgcagcaggggcagcttaac
caggcctttcagcaggctctgtctgccgctgatctgaacctggtcctgtatgtgtgcgag
acagttgactcacagcaggtgtttggacagcacccctgtcctctcatccagcctgtgctc
ctctcactcatccagcagctctccaccaacctggccaccaggacagagctcaagatcagc
tacttggaggacgcggtgatgaacctggatcacagtgaccccgtgacccgagaccacatg
agctccgtgctggcgcaggtccgacagaagctctaccagtacctgcagctggagccccac
agccctctcagcaagagagcccgccgcctgatgatgatgctgcagggcctggtcaaccac
ggcatgagctaa
DBGET
integrated database retrieval system
