Lepisosteus oculatus (spotted gar): 102686855
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Entry
102686855 CDS
T07349
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8 isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102686855 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102686855 (prpf8)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102686855 (prpf8)
Complex C
U5 SnRNP specific factors
102686855 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
102686855
NCBI-ProteinID:
XP_015223244
Ensembl:
ENSLOCG00000005409
LinkDB
All DBs
Position
LG22:8454879..8478471
Genome browser
AA seq
2336 aa
AA seq
DB search
MAAAAFPYRAAPGTIPTPGQVPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQMELDPEEDASVADWFYEHQPLKDNTKFVNGCTYRRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPVLDDDEEFELPEYVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
AIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
SAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEF
IDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVR
TDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWE
GLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTG
IFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKS
YKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERY
ARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGGKPLIQQAMAKIMKANPA
LYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLT
TKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPK
QIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNL
YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKV
EVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQL
TATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKE
TGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVHL
PNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFT
PGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQVSW
NYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgctgcttttccgtaccgagcagcaccagggacgatccccactccgggccag
gtgccggactacatgtctgaagagaagctgcaggagaaagctcggaaatggcagcagctg
caggcgaagcgctacgcggaaaagaggaagttcggcttcgtggacgcccagaaggaggac
atgccccccgagcacgtccgcaagatcatccgcgaccacggcgacatgaccaacaggaag
ttccgccatgacaagagagtgtatctgggcgccctgaagtacatgcctcatgctgtcctg
aagctgctggagaacatgcccatgccctgggagcagatccgggacgtgcccgtgttgtac
cacatcactggggccatctcctttgtcaacgagatcccctgggtcatcgagcccgtctac
atcgcacagtggggcgccatgtggatcatgatgcggcgcgagaagagagaccgccggcac
ttcaagcgcatgcgcttcccgcccttcgacgacgaggagccgccgctggactacgccgac
aacatcctggacgtggagcccctggaggccatccagatggagctggaccccgaggaggac
gcgtccgtggctgactggttttacgagcaccagcccctcaaggacaacaccaagtttgtg
aacgggtgcacgtaccgccgctggcagttcaccctgcccatgatgtccacgctgtaccgg
ctggccaaccagctgctcactgacctggtggacgataactacttctacctgtttgacctg
aaggcgttcttcacctccaaggctctgaatatggccatccccggggggcccaagtttgag
cccctggtcagagacatcaacctgcaagacgaagactggaatgaattcaacgacatcaac
aaaatcatcatcaggcagcccatcaggacggagtacaagattgcctttccctacctgtac
aacaacctgcctcaccacgttcatctcacctggtatcacactccgaatgtggtgttcatt
aaaacggaagatcctgatctgccggccttctacttcgatcccctgatcaaccccatctct
cacagacactcagtcaagagtcaggagcccgtgcttgatgacgacgaagagtttgagctc
cccgagtacgtggaacccttcctgaaagacacgcccctctacacggacaacacagccaat
gggattgctctgctctgggctccccgccccttcaacctgcgatcaggaaggacacgcagg
gctatagacatcccactcattaagaactggtaccgtgagcactgccctgctggccagcct
gtgaaagttcgcgtgtcctatcagaagctgctcaagtactacgtgttgaatgcgctcaaa
cacagacctcccaaagcgcagaagaaaaggtatcttttccgctccttcaaagccaccaag
ttcttccagtcgacgaagctggactgggtggaggtgggcctgcaggtgtgccggcagggc
tacaacatgctcaacctgctgatccacaggaagaacctcaactacctgcacctggactac
aacttcaacctcaagcccgtcaagaccctcaccacaaaggaacgtaaaaagtctcgattt
ggcaacgcgttccacttgtgccgagaggtcctgcggctcagcaagctggtggtggacagc
cacgtgcagtacagactgggcaacgtcgacgccttccagctggccgatgggctgcagtac
atctttgctcacgtgggccagctgacaggcatgtacagatacaagtacaagctgatgaga
cagattcgcatgtgcaaggacttgaagcacctcatctactaccggttcaacactggccca
gtggggaaagggcctggctgtggtttctgggcccctggctggagagtctggctcttcttc
atgaggggaatcacccctctgctggaacggtggctggggaacctgctggccaggcagttt
gaggggcgccactcgaagggcgtggcgaagaccgtgaccaagcagcgcgtggagtcgcac
ttcgacctggagttgagggcggccgtcatgcacgacatcctggacatgatgcccgagggc
atcaagcagaacaaggccagaaccatcctgcagcacctgagcgagtcctggaggtgctgg
aaggccaacatcccctggaaggttcccgggctgcctactcccatcgaaaacatgatcctc
cgctacgtgaaagccaaggcggactggtggacgaacacggctcactacaaccgggagcga
atccggcgcggcgccaccgtcgacaaaaccgtctgcaagaagaacttgggccgcctgacg
cggctctacctgaaggccgagcaggagaggcagcacaactacctgaaggatggcccctac
atcacagcggaggaggctgtagccatctacaccaccacggtgcactggctggagagcagg
cgcttctccccaatccccttccctcccctgtcctacaagcacgacaccaagctgctgatc
ctggccctggagaggctgaaggaggcgtacagcgtgaaatcgaggctgaaccagtcgcag
cgcgaggagctgggcttgatagagcaagcgtacgacaacccccacgaggcgctgtccagg
atcaagcgtcacctgctcacccagagagccttcaaagaggttggcatcgagtttatggac
ctgtacagtcacctggtgccggtctacgatgtggagcctctggagaagatcacggacgcc
tacttggaccagtacctgtggtacgaagcggacaaacgcaggctcttccctccttggatc
aaaccagccgacaccgagcctcccccgctgctggtttacaagtggtgccaggggatcaac
aacttgcaggacgtgtgggagacgacggagggcgagtgcaacgtcatgctggagtcgcgc
tacgagaagatgtacgagaagatcgacctgacgctgctcaacaggctgctgcgcctcatc
gtggaccacaacatcgccgactacatgacggccaagaacaacgtggtcatcaactacaag
gacatgaaccacacgaactcgtacgggatcatccgagggctgcagttcgcctctttcatc
gtccagtactacgggctggtgatggacctgctggtgctgggcctgcaccgggccagcgag
atggcaggacccccgcagatgcccaacgacttcctgagcttccaggacattgccacagag
tcggctcaccccatccggctctactgccgctacatcgaccgcatccacatcttcttcagg
tttagtgccgatgaggcgagggatcttatccagaggtacctgaccgagcatccggacccc
aataacgagaacattgtggggtacaacaacaagaagtgctggcccagggatgccaggatg
aggctgatgaagcacgatgttaatctgggccgggctgtgttctgggacatcaagaaccgc
ctgccgcggtccgtgaccacggtgcagtgggagaacagcttcgtgtcggtctacagcaag
gacaaccccaacctgctcttcaacatgtgcggcttcgagtgccgcatcctgcccaagtgc
cggaccagctacgaggagttcacgcacaaggacggcgtctggaatctgcagaacgaggtg
acaaaggagcgcactgctcagtgcttcctgcgcgtggacgatgaatccatgcagagattc
cacaaccgcgtccggcagatcctcatggcttctggatccaccaccttcactaagattgtg
aacaagtggaacacggctctgatcggcttgatgacctatttccgcgaggctgtggtgaac
acccaggagctcctggacctgctggtgaagtgcgagaacaagatccagacccgaatcaag
atcggactcaattccaagatgccgagccgtttcccacccgtcgtcttctacacccccaaa
gagctgggagggctcggcggcatgctgtccatgggccacgtgctcatcccccagtcggac
ctccggtggtccaagcagactgatgtgggcatcactcatttccggtcaggaatgagccac
gaggaggaccagctgatccccaatctgtaccgctacatccagccgtgggagagcgagttc
atcgactctcagagggtgtgggcagagtacgcactgaagagacaggaagccatcgctcag
aacaggcgcttaacccttgaagacctggaggactcctgggacaggggcatcccccgtatc
aacacgctgttccagaaggacaggcacacgctggcctacgacaagggctggcgggtcagg
accgacttcaagcagtaccaggttttgaagcaaaaccccttctggtggacccaccagaga
cacgacgggaaactgtggaacttgaacaactaccggacggacatgatccaggctctggga
ggtgtggagggcatcctggagcacactctcttcaagggcacctacttccctacctgggag
ggtctcttctgggagaaggccagtgggtttgaggaatccatgaagtggaagaagctgacc
aacgctcagagatctggtctgaaccagattcccaacagaagattcactctctggtggtcc
cccacaatcaacagggccaatgtgtatgtaggtttccaggtgcagttggatctgacaggg
atctttatgcacggcaagattcccaccctcaagatctccctgatccagatcttcagagcc
cacttgtggcagaagatccatgagagcattgtcatggatctgtgtcaggtgtttgaccag
gagctggatgctctggaaatagagactgtgcagaaggaaactatccatcccaggaagtcc
tataagatgaactcctcctgtgccgacatcctgctgtttgcatcttacaagtggaatgtg
tcccgtccctctctgctggcggactcaaaagacgttatggacagcaccacaacccagaag
tactggatcgatatccagctgcgatggggggactatgactctcatgatatcgagaggtac
gccagggccaagttcctggactacaccacagacaacatgagcatctacccctcccccact
ggagtcctcatcgccatagacctggcctacaacctgcacagtggctacggcaactggttc
ccgggagggaagcccttgatccagcaggcgatggcgaagatcatgaaggccaaccctgct
ctgtacgtgctgagggagcgcatccgcaagggcctgcagctctactcctccgagcccacg
gagccctacctgtcctcgcagaactacggcgagctcttctccaaccagatcatctggttt
gtggatgacaccaacgtgtaccgagtcaccatccacaagacctttgaaggcaacttgacc
acgaagcccatcaatggagctatatttattttcaacccccgaacaggccagctcttcctg
aagatcattcacacctctgtgtgggctggacagaaacgtctgggacagctggccaaatgg
aagacggccgaggaggtggctgccctgatccgctcactgcccgtggaagagcagcccaag
cagatcattgtcaccaggaagggcatgctggaccccttggaggtccatttgctggatttc
cccaacattgtgatcaagggctctgagctgcagctgcccttccaggcctgtctgaaggtg
gagaaatttggagatctcattctgaaggccacagagccgcagatggtgctgttcaacttg
tatgatgactggctgaagaccatctcatcctacactgccttctcccgtctgatcttaatc
ctgagggcgctccatgtcaacaacgaccgcgccaaggtcatcctgaagccggacaagacc
accataaccgagccgcaccacatatggcccacactgaccgacgaggagtggatcaaggtg
gaagtgcagctcaaagatctcatcctggctgactacgggaaaaagaacaacgtgaacgtg
gcttccctgacccagtcggagatcagggacatcattctggggatggagatctcggccccc
tcgcagcagcggcagcagatcgctgagatcgagaagcagacgaaggagcagtcccagctg
accgccacgcagacccgcacggtcaacaagcacggcgacgagatcatcacctccaccacc
agcaactacgagacgcagaccttctcctccaagacggagtggcgagtccgagccatctcc
gctgccaacctgcacctgcggaccaaccacatctacgtgtcctcggatgacattaaggag
acgggatacacctacatcctgcccaagaacgtgctgaagaagttcatctgcatctctgac
ctccgcgctcagattgcagggtacctgtacgggaccagccccccggacaacccgcaggtg
aaggagatccgctgcatagtgatggtgccccagtgggggacacaccagaccgtgcacctg
cccaaccagctcccccagcatgagtacctcaaggaaatggagcccctgggttggatccac
acacagccgaacgagtcgccccagctgtccccgcaggacgtcaccacgcacgccaaggtc
atggccgacaacccgtcctgggatggggagaagaccatcatcatcacctgcagtttcacc
cctggttcctgcaccctgaccgcctacaagctgacccccagcgggtacgagtggggccga
cagaacacggacaagggcaacaaccctaaaggctacctgccctcgcactacgagagggtg
cagatgctgctgtctgaccgcttcctgggattcttcatggtccccggccaggtctcctgg
aactacaacttcatgggtgttcgccacgaccccaacatgaagtacgacctgcagctggcc
aaccccaaggagttctaccacgaggtgcatcgcccgtctcacttcctgaacttcgcctcc
ctgcaggagggcgagatctacaacgcagaccgagaggacatgtacgcatag
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integrated database retrieval system
