Lepisosteus oculatus (spotted gar): 102686943
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Entry
102686943 CDS
T07349
Symbol
ddx21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
loc03009
]
102686943 (ddx21)
03036 Chromosome and associated proteins [BR:
loc03036
]
102686943 (ddx21)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102686943 (ddx21)
Ribosome biogenesis [BR:
loc03009
]
Eukaryotic type
Pre-60S particles
Helicases
102686943 (ddx21)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
102686943 (ddx21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
tRNA_lig_CPD
Motif
Other DBs
NCBI-GeneID:
102686943
NCBI-ProteinID:
XP_006630629
Ensembl:
ENSLOCG00000009123
UniProt:
W5MRW7
LinkDB
All DBs
Position
LG5:17809704..17827941
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AA seq
777 aa
AA seq
DB search
MPGKIVESEDIGMEDDLDTSLEDYKPSKKQKKGKKSKDEKKPKKKKGTVEGQPDETDTPP
PKKKKRASVEEPPASETTSNGDAVRGSSAKKHKSKSVNGTPLMKDLPHSSEESGSDSGHE
TEPKPKKTGKAVVNGVSTKKLKRQASSSPEQGASVLTPSHSSEESSIDSEKEAEELTPEQ
KAGAFSNFRISKETIQLLQARGVTYLFDIQVKTFDFVFDGNDVVGQARTGTGKTFSFAIP
LIEKLQSSPEERKRGRPPKVLVLVPTRELALQVSRDFKDITKKLSVACFYGGSPYNPQLD
NIRNGIDILVGTPGRIKDHLQNNKLDLSKLVHVVLDEVDQMLDMGFAEQVEEILSAAYRK
DSENNPQTLLFSATCPHWVYAVAKKYMRPEYNHVDLIGQKTKKTATTVEHLAIMCHWTKR
ASVIGDVIQVYSGSHGRTIVFCETKREVDELTHNESIKQVAQPLHGDIAQKQRELTLKGF
RNGSFEVLVATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGVCICFYQH
KEEQMLRYVEYKAGITFKRVSVPTAHEIIQASSKDALRFLDSVPPAAIEYFRSAAEKLVE
ERGAVEALAAALAHISGAKSIEQRSLLSCDAGFVTMVLTCSIEMHTMSYAWRGLKEQLGE
DIDSKITRLTFVKGKTGVCFDVPEENVKEILEKWQDSRRWQLCVATELPELEEAPSRDHG
SRFGGRSSFGRGRGGRNDRSRGGRNDRSRGGRNNRGRGGRNDRREGQKRNFDQAFNY
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgccgggaaagattgttgaaagtgaagacatcgggatggaagacgatcttgacaccagt
ttggaggactataagccatccaagaaacaaaagaagggaaagaaatctaaggatgaaaag
aaacccaagaaaaaaaagggaacagtggaagggcagcccgatgagactgacacacctcct
cccaagaagaaaaagcgggcttctgtcgaagagccaccagcctctgaaacgacaagtaac
ggagacgccgtcaggggcagctcagcaaagaaacacaagtccaaatccgtcaatggaaca
ccattaatgaaagatttgcctcattccagtgaagaatccggcagtgattctggccatgaa
acagagcctaagccgaagaagacggggaaggcagtcgtcaatggcgtctcgacaaagaag
ttgaaacggcaagccagcagctccccggagcagggagcctcggtgctcaccccgtctcat
tccagcgaggaatccagcatcgacagcgagaaggaagcggaggaattaactccagaacag
aaagccggtgccttctccaatttccgaatctccaaagaaaccattcagcttcttcaagcg
aggggcgtgacgtacttgtttgacatccaggtgaaaaccttcgacttcgttttcgatggg
aacgatgtggttggtcaggcgaggactggcacaggaaagaccttctccttcgccattccc
ctcatcgagaagctgcagtcgtctcctgaagagaggaagagggggagaccccccaaggtg
cttgttcttgttcctacaagagagctagcccttcaagtgtcaagagatttcaaggacatc
acaaagaagctatcagtggcttgtttctatggtggaagtccctacaatccccagttggat
aatatacgcaatggcattgatatccttgtgggcaccccggggagaattaaagaccacctt
cagaataacaagctggacttgtccaagctggtgcacgtggttctggatgaagtggaccag
atgctggatatgggctttgcagaacaggtagaggagatcctgtcagctgcctatcggaaa
gattctgaaaacaaccctcagacactgctattctcagccacatgtccccactgggtgtat
gccgtggccaaaaagtacatgagacccgaatacaaccatgttgatctcatcggtcagaaa
accaagaagactgccaccacagtggaacacttggccataatgtgtcactggaccaagcgg
gcatcggttataggagatgtcatccaggtgtacagtgggagccacggacgcacaattgtc
ttctgcgagaccaagagagaagtcgacgagctgacgcacaacgagtccatcaagcaggtt
gcccagcccttgcacggggatattgctcagaagcaaagggagctcacgctgaagggcttc
aggaacgggtctttcgaggtcttggtggccacgaacgtagcagctcgggggctggacatt
ccagaggtcgacttggtcatacagtgttccccgccaaaggatgtggactcctacatccat
cgttctggtcgaactggcagggctggccgtactggagtttgcatttgtttctaccagcac
aaggaagagcaaatgctcagatatgtggagtacaaagctggtataacatttaagagagtt
agtgtcccaactgcacatgaaatcatccaagcttccagtaaagatgccttaaggtttctg
gattcagtgcccccagctgctatcgagtatttccgctcggcagcagagaagctggtggaa
gagcgaggggcagtagaagccttggctgccgccttggcacacatctctggcgccaagtcc
attgaacagcgctctctgctgtcctgtgatgctggctttgtgactatggtgttgacctgc
tcaatagaaatgcacacaatgagctatgcctggagggggctgaaggaacagcttggagag
gacatagacagcaagatcacgagattaaccttcgtaaaagggaagactggagtatgcttt
gatgtcccagaagaaaacgtgaaggagatcttggaaaagtggcaggactcccgccgctgg
cagctatgtgtggcaacggagctccccgagctggaggaagctcccagcagggaccacggc
tccaggttcggaggcagatcttcctttggcagaggccgagggggcaggaacgaccggagc
agagggggcaggaacgaccggagcagagggggcaggaacaaccggggcagaggagggagg
aacgacagacgggagggtcagaaaagaaactttgaccaagcatttaattactaa
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