Lepisosteus oculatus (spotted gar): 102686954
Help
Entry
102686954 CDS
T07349
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04140
Autophagy - animal
loc04148
Efferocytosis
loc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102686954 (vps18)
04148 Efferocytosis
102686954 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102686954 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
loc04131
]
102686954 (vps18)
Membrane trafficking [BR:
loc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102686954 (vps18)
Hops complex
102686954 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
zf-RING_11
zf-RING_16
zf-ANAPC11
zf-RING_Vps41
zf-RING_2
zf-rbx1
DUF5600
DUF1664
KNOX2
DUF4446
zf-RING_5
zf-C3HC4_2
DUF2175
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
102686954
NCBI-ProteinID:
XP_006632494
Ensembl:
ENSLOCG00000012325
UniProt:
W5N3F6
LinkDB
All DBs
Position
LG7:complement(14114901..14123939)
Genome browser
AA seq
979 aa
AA seq
DB search
MASILDEYEDSQSIRHSMQKTTRLSASNIGITHSGFVNARLEEEKPIFNKQRIDFSPPEK
INHFAVCNNQLCMSLGKDTLLRIDLGKPDQPNQVELGRKDEAKVHKLFLDPTGAHLVISL
TSSECLYLNRNTQKVRSLSRWKGHLIESIAWNKLLGTETNTGPILAGTTQGLIFEAEISA
SEGASLFNTNPDQYFRQVHMLEEDGKPAPVCCLEIDRGFESKYFIIATTRKRLFQFVGKV
AEGAEQQGFSSIFSQNQDHFPSFQEFPVSMGYSEIAFYTPKLRTSPKSFAWMMGNGVLYG
NLDYGRPDSLLSDVEVWEYTPDIDFKFNKPISIVLTQFHFLLLLPDRVKAVCTLNGQVVY
EDVFPDKFGPLKRMIKDPVGSLVWIYTEKAVFRYHIQREARDVWQMYMSMNKFDRAKEYC
RDRPECMDIVLAKEAEHCFQNKKYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLIK
KLSILKSSEKTQITLLVTWLTELYLNRLGILEGDELKRVTFLEAREEFRKFLSSPKNKEC
LYNNRTTIYDLLASHGNVDDMVYFSVIMQDYERVVSHYCQHDDYEAALDVLSKHADEKLF
YKFSPVLMQHIPKKVVDAWIKMGKKLDAKQLIPALVNYSQIGSTEQINETIRYMEFCVYE
VTVTEEAIHNYLLSLYAKYKPECLLWYLEQAGTHSSEIHYDLKYALRLFAEHGHRQACVH
VYKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMN
CLSSCNLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNKHIEELKQEMEEATESAKRIRE
DIQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCSHMFHYDCLLQEVNPHLSTYKLTKL
EELQKKLLATSQPTKARHRQKEEDTISLGKGQPSREQIKSDIDDIIAAECVYCGELMIKS
IDKPFIDPQKYEDEKSSWL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatacttgatgagtatgaggattcgcagagcatccgacactccatgcagaaa
actacccgcctctctgcctccaacatcggaattactcattcaggatttgtgaatgccagg
ttggaagaagagaagccaatatttaacaagcaaagaattgatttctctcctcctgagaag
attaaccattttgcagtctgtaataaccaactgtgtatgagtcttgggaaggacactttg
ctgaggattgatcttgggaagcctgatcaacctaatcaagttgaacttggacgtaaagat
gaagctaaagtacacaaactcttccttgatcctacaggtgcccatctggtgatcagtctg
acgtcaagcgagtgcctctacctaaacagaaatacccagaaagtgcgaagtttgtctcga
tggaaggggcacctaatagagagcattgcttggaacaagctactgggtacagagaccaac
acgggccccatcctagctggcactacccaggggctgatctttgaggccgaaatttcagct
tcggaaggagcaagccttttcaacacgaacccggaccagtatttccgacaggtgcacatg
ttggaagaagacggcaagccggcccctgtttgctgcttggagattgaccgcgggtttgaa
tcaaagtactttatcattgccaccacccgcaagcgcctgtttcagtttgtagggaaggta
gcggaaggtgccgagcagcagggcttcagctctattttcagtcaaaatcaggaccacttt
cccagctttcaggagttcccagtaagcatgggctacagcgagattgcattttacaccccc
aagctacgcacctccccaaaatcctttgcctggatgatggggaatggagtgttgtatggg
aatctggactatggacgccccgattctctgctgagtgatgtggaggtttgggaatatacc
cctgatattgatttcaaattcaacaagcccatatcaattgtcctgacacagttccatttt
ctccttctcctgccggatcgtgtgaaggctgtctgcactttgaatgggcaggttgtttac
gaagatgtctttccggacaaatttgggccattgaaaaggatgattaaagatcccgtgggc
agtctggtgtggatatacactgaaaaggcggtttttcgctatcacattcaaagagaggcg
cgagatgtctggcaaatgtacatgagcatgaacaagtttgacagggctaaagagtactgc
agggataggcctgaatgtatggacattgtcttggccaaagaagcagagcattgtttccag
aataagaaatacctggagagtgcaaagtgctatgcccttacacagaactattttgaagag
attgcactgaaattcattgaagccaaacaggaggaagccctcaaggagttccttataaag
aaactcagtatccttaagtccagtgagaagacccaaatcaccctgctggttacatggctg
actgaactgtacctcaacaggctggggattcttgaaggagatgaattgaaacgtgtcact
ttcttggaagcaagagaagagttccgcaagttcctaagcagtcccaaaaacaaagaatgc
ctgtacaacaatagaaccaccatatatgatctgttggccagccatggtaatgtagacgac
atggtgtacttctccgtcatcatgcaggactacgaacgagtcgtctcccactactgccag
catgatgactatgaggcagcactggatgtgttgtcgaagcacgcagacgagaaactgttc
tataagttctctcccgttctcatgcagcacatcccgaaaaaagttgtggatgcttggatc
aagatggggaaaaaactagatgccaagcagctcatccctgctctggttaattacagccag
attggcagcacggagcaaattaacgagaccatacgctacatggagttttgtgtgtatgaa
gtgactgtgacagaggaggcaatccacaactacctcctgtccctttatgctaaatacaaa
cctgaatgtttgctctggtatttggagcaggctggaactcactctagtgaaatccactat
gatctgaagtatgctctgcgtctgtttgcggagcacggccatcgccaggcctgtgttcac
gtttataagataatggaactttatgaagaagctgtggatctggcactgcaagtggatgta
gacctggccaagtcatgtgcagatctgccagaagacgatgaggagctgaggaagaaactt
tggttgaagatcgcccgtcatgtggttcaagaggaaaaagatgtcaagaaagccatgaac
tgcctgtccagctgcaatttgctgaagattgaggacattttgcctttcttccctgacttc
gtcaccatcgaccacttcaaggaggccatctgcaactccctggaggagtacaacaagcac
attgaggagctgaaacaagagatggaggaagccacagagagcgccaagcggatccgagag
gacatccaggagatgaggaacaagtatggtgtggtggagtcccaggagaaatgtgccgcc
tgcgatttccccctgctcaaccgcccattctacctcttcctctgcagccacatgtttcac
tatgactgcctcttgcaagaggtgaaccctcatctgtccacttacaagctaaccaaacta
gaggagctccagaaaaagctgttggctacgagccagcccaccaaagcccggcatcggcag
aaggaggaggacaccattagccttggaaaagggcagccgagtcgagagcagatcaagtcg
gacattgacgatataatagctgctgagtgcgtgtactgtggggagctgatgatcaaatcc
attgacaagccgttcattgacccacaaaagtatgaagacgaaaaatcaagctggctgtaa
DBGET
integrated database retrieval system
