Lepisosteus oculatus (spotted gar): 102687054
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Entry
102687054 CDS
T07349
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X3
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04137
Mitophagy - animal
loc04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
102687054 (rabgef1)
04137 Mitophagy - animal
102687054 (rabgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
loc04131
]
102687054 (rabgef1)
Membrane trafficking [BR:
loc04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
102687054 (rabgef1)
Protein recycling
Other Rab GTPase associated proteins
102687054 (rabgef1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
RecG_N
DUF2336
CID_GANP
Motif
Other DBs
NCBI-GeneID:
102687054
NCBI-ProteinID:
XP_006640866
Ensembl:
ENSLOCG00000001391
LinkDB
All DBs
Position
LG22:complement(537417..559426)
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AA seq
492 aa
AA seq
DB search
MSQKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYQRARQKQIQEDWALAER
LQREEEAAYASSQGAQSQPSLAPFSKFEEKKSNEKTRKVTTVKKFFSPSSRTASKKESQE
TKTPSPSISRQASMETDRVSRDFIDFLKGLQKPGREIHKQCRAFVESMGNKKDLSAEELS
ECVQDFYQNMADRLLSHFKGSTERVERVMDQVEKYLMTRLYKNVFCPETTDDEKKDLAVQ
KRIRALHWVTIQMLCVPVNEDIPEVSDNVVKAITDVIEMDSKRVPRDKLACITRCSKHIF
NAIKITKSEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL
CCAVAFIEKLDAQSLNLSPEDFERYMSGQASPRRQEPEAWPPPAGGSPALAQVYQSLELL
SGLGARQERVLEGARRLEGDLIDWRAGVEREVQDILDRHPLDLRLPPASAIDSDNVENDR
LPPPLQPQVFAG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaagtctgaacgccgagggatccatgtggaccagtcagagttgctgtgtaag
aaaggatgcggttactatggcaaccctgcctggcaaggcttctgttcaaagtgctggcga
gaggaataccagcgggccaggcagaaacagatccaggaggactgggctctggctgagagg
ctgcagagagaggaggaggcagcctatgccagcagccagggggcgcagtcccagccctct
ctagcacccttctccaaatttgaagagaagaagtcaaatgagaagacgcgcaaggtcaca
acggtgaagaaattcttcagcccttcatcgcgcactgctagcaagaaagagagccaggag
accaagacgcccagcccgtccatcagccggcaggccagcatggagacggaccgggtgtcc
cgggacttcatcgacttcctgaagggcctgcagaagccgggccgcgagatccacaagcag
tgccgggccttcgtcgagagcatgggcaacaagaaggacctcagcgcagaagaactgtca
gagtgcgtccaggacttctaccagaacatggccgaccgcctgctgtcccacttcaaaggg
tccacagaacgcgtggagcgtgttatggaccaggtggagaagtacctcatgactcggctc
tataagaacgtcttctgtccagaaaccactgatgacgagaagaaggatctggctgtgcag
aagcgcatcagggccctccactgggttaccattcagatgttgtgtgtcccggtgaatgaa
gacatccctgaggtctcggacaatgtggtgaaagccatcacagatgttatcgagatggac
tccaagcgcgtgcccagggacaagctggcttgcatcacgcgctgcagcaagcacatcttc
aacgccatcaagatcaccaagagcgagcccgcctctgcggacgacttcctgcccaccctc
atctacatcgtgctgaaggccaacccgccccgcctgcagtccaacatccagtacatcacc
cgcttctgcaaccccagccgactcatgaccggcgaggacggctactacttcaccaacctg
tgctgcgcagtggctttcatcgagaagctggacgcccagtccctcaacctcagcccggag
gactttgagcgctacatgtcgggacaggcgtcgccccgcaggcaggagcccgaggcctgg
cccccgccggcgggcggcagccccgccctggcgcaggtctaccagagcctggagctgctg
tcggggctgggcgcgcggcaggagagggtcctggagggggcgcggcggctggagggcgac
ctgatcgactggcgcgccggggtggagcgcgaggtgcaggacatcctggacaggcacccg
ctggacctccggctgccccccgcctcggccatagattccgacaacgtggagaacgaccgc
ctgccgcccccgctgcagccgcaggtcttcgccggctag
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