Lepisosteus oculatus (spotted gar): 102687164
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Entry
102687164 CDS
T07349
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102687164 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
102687164 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102687164 (lsm5)
03041 Spliceosome [BR:
loc03041
]
102687164 (lsm5)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102687164 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
102687164 (lsm5)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
102687164 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
102687164
NCBI-ProteinID:
XP_006634519
Ensembl:
ENSLOCG00000012903
UniProt:
W5N5H8
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Position
LG9:47476074..47479744
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AA seq
91 aa
AA seq
DB search
MAAAPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctccggctacaaacccttcacaattgctcccgcttgagcttgtggacaaa
tgtattggttcccggattcatattgtgatgaagaacgacaaggagattgtcggcactctg
ttgggatttgatgactttgtcaacatggtgcttgaagatgtcactgaatttgagatcaca
ccagagggaaggaggataaccaaactggatcagatcttattgaatggaaacaacatcacc
atgcttattcctggaggtgaaggacctgaagtatga
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