Lepisosteus oculatus (spotted gar): 102687289
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Entry
102687289 CDS
T07349
Symbol
utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102687289 (utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
loc03009
]
102687289 (utp18)
Ribosome biogenesis [BR:
loc03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
102687289 (utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40
WDR55
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_EML
NBCH_WD40
Beta-prop_Vps41
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
KNTC1_N
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
DUF7165
PD40
Cytochrom_D1
Beta-prop_TEP1_C
WD40_like
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-GeneID:
102687289
NCBI-ProteinID:
XP_006635381
Ensembl:
ENSLOCG00000011061
LinkDB
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Position
LG10:28662785..28682280
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AA seq
529 aa
AA seq
DB search
MDKNNRKCEASQRKSRKRAAVSDGQLEAEEIKRQIHLSKVTALGEKEESERLLEDLVFGA
EDELVERLIGAPEDEGAPSGNLLDESSSDSEVENESRLQVERTKKAAWLDEDDNLEEDVD
MTHRFRKDFLKSDIEKKLPKQMVQQRLREQFQRAMGGTPSWAEKGVKKKNRRKGQKGDSD
DDDDDEEDSLLKKTGNFVAASESLPKGIIQMKNCLNANNDRPSDTKLTTVQFHPSAQVVM
TAGMDQSVSLFQVDGKTNPKIQSIFLERFPVHKARFSADGEQVIATGTRNRLFYVYDMIE
GKIIPVHGVRALNESQVKEFEVSPDGSFLLLSGTSGYLHLLTLKTKELVRSMKINGKVTG
ATFSSDGSKIYACSDEGEVYIWDVKSSKWMNRFTDEGCLKGTSIAVSRNGQYLACGSNSG
VVNIYSHDACLQESTPKPLKAIMNLVTSASSLLFNPTTEILAMASNVVDEAVKLVHIPSF
SVFSNFPVFRRKTIFLPQCMDFSPRSGFFSVANNKGKALLYRLKHYTDF
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaataaccgcaaatgtgaagcgtcacaacggaaaagtagaaaaagagctgca
gtctcggacggtcagctcgaagcagaagagattaagaggcagatccacctcagcaaggtg
acggcgctgggcgagaaagaggagtcggagaggctgctggaggacctggtgtttggggcc
gaagacgagctggtggagaggctcataggagcgccagaggatgagggtgcgccaagtggc
aacctgctggatgagtcctccagtgattcagaagttgagaacgaatctcggctgcaagtg
gagcgtaccaaaaaggccgcctggttggatgaggatgacaaccttgaggaagacgtggac
atgactcacaggttccggaaggattttctgaagagcgacatagagaagaaactcccgaag
cagatggtgcagcagagactgcgtgagcagttccagagagcaatgggtggaacgccatca
tgggcagaaaagggtgtgaagaagaagaacaggaggaaaggacagaagggtgacagtgat
gatgatgatgatgatgaggaggacagcctgttaaaaaagacaggcaactttgttgctgct
tccgaatctcttcccaaaggaatcatacagatgaagaactgtttgaatgccaacaatgac
cgtccatcagacacgaaactaactacagtccagttccacccttcagcccaggtggtgatg
acagcagggatggatcagtctgtatctctattccaggtcgatggtaagaccaaccccaag
atccagagtatcttcctggagcgctttcctgtgcacaaggcccgatttagtgcagatggc
gagcaggtcatcgccacgggcactcgcaaccggctcttttacgtgtatgacatgatagaa
ggaaaaataatccctgtgcatggtgtcagagcattaaatgagagccaggtgaaagagttt
gaggtgtctcccgatggttcatttcttctcctctctgggacctcaggatatctccatctg
ctcaccttgaagaccaaggagctggtgcggagcatgaagatcaatggtaaggtgacagga
gccacattctcctctgatggcagcaaaatctacgcctgctctgatgagggagaagtatac
atctgggatgttaaaagcagtaaatggatgaaccggttcacagatgaaggctgtttaaaa
ggaacaagtattgctgtgtccagaaatgggcagtatctggcttgtgggtctaattctgga
gtggtaaatatctattcgcatgatgcttgtcttcaagagtctacaccaaagccattaaag
gccatcatgaatctggtgacatcagcttcttcactgctgttcaatcccaccacagaaata
ctagcgatggcttccaacgtagtagacgaagccgtcaaactggtgcacatccctagtttc
agcgttttttccaactttcccgtattccgacggaaaaccattttcctccctcagtgtatg
gacttctctcctcgcagcggcttcttctctgtggctaataacaagggcaaagctctgctg
tacaggttgaaacattacacagacttctaa
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