Lepisosteus oculatus (spotted gar): 102688039
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Entry
102688039 CDS
T07349
Symbol
ddx41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
102688039 (ddx41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102688039 (ddx41)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102688039 (ddx41)
Spliceosome [BR:
loc03041
]
Complex C
Other components
Complex C specific factors
102688039 (ddx41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
UTP25
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
102688039
NCBI-ProteinID:
XP_006631993
Ensembl:
ENSLOCG00000011956
LinkDB
All DBs
Position
LG6:complement(36672890..36688509)
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AA seq
614 aa
AA seq
DB search
METESRTRKRVYQEEEEASDFSDEEKYVPFVPVKQRKQQMLQKLLRLRGKGLTEEEQKDS
GNEQRDDEEAIGPRSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESVAEGRALMS
VKEMAKGITYDDPIKTSWKGPRYILSMPPARHDRVRKKYHILVEGEGIPPPIKSFREMKF
PAAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEK
RLPFFKREGPYGLIICPSRELARQTHSIIEYYCKLLEEEGAPQLRCALCIGGMSVKEQME
VVKHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQ
RQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLECL
QKTSPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVA
TDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKSCDESVLMDL
KALLIEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQVTN
IGRKDYLAHSSMDF
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaaagcagaacgagaaagagagtttaccaggaagaagaggaggcctccgat
ttttccgacgaggagaaatatgttccttttgttccagtgaaacagcgaaaacagcaaatg
ttacagaaattgctacgtctgagagggaagggcttgactgaggaggagcagaaggacagt
ggcaacgagcagagagatgatgaggaggctatagggccacgctccaatgtcagcctgctt
gaccagcaccagcacctcaaggagaaggcagaggcacgaaaggagtctgcaaaggagaag
caactgaaggaggaagaaaaaatcttggagagtgtggctgaggggagagctttaatgtct
gtaaaggagatggcgaagggcatcacatatgatgatccaataaaaacaagctggaagggc
ccaagatacatcctgagcatgcctccagctcgccatgaccgtgtcagaaagaagtaccac
attctggtcgagggagaaggtatcccaccacctatcaagagcttcagggagatgaagttc
cctgcagcaatattaaaaggattgaaaaagaaaggaattgttcatccaacacctattcaa
attcaggggattccaactatcctgtcgggcagagacatgattggaatcgctttcaccggc
tcgggaaagaccctggttttcacgctgccgatcatcatgttctgcctggagcaggagaag
aggctgcccttcttcaagagggaggggccctatggactcatcatttgcccctctagagag
ctggcgagacagacccatagcatcattgagtactactgcaagctgctggaggaggaggga
gccccacagctgcgctgtgccctgtgcatcgggggcatgtctgtgaaagagcagatggaa
gtggtcaagcatggtgttcacatgatggtggccaccccagggcggttgatggacctactg
cagaagaagatggtaagcctggatatctgccgctacctggccctggacgaggcagacaga
atgattgacatgggctttgaggaggacatcaggaccatcttctcctatttcaagggccag
cggcagactctgttgttcagtgccactatgcccaagaagatccagaactttgccaaaagc
gcattggtgaagcccatcaccattaatgttggccgcgctggagccgcaagcttggatgtt
atacaggaagtggagtatgtgaaggaggaagctaaaatggtctacctactggaatgctta
cagaaaacttcaccgccggttctcatattcgctgagaagaaggccgatgtggatgccatc
cacgagtacctcttgctcaagggtgtggaagcagtggctatccatggaggaaaagaccag
gaagaaaggaccaaggcgattgaagccttcaaggaggggaagaaggatgtgctggtggcc
actgatgttgcttccaagggtctggatttcccagccatccaacacgtggtgaattatgac
atgcctgaggagattgagaattacgtgcacagaataggtcgtacaggccgatctgggaag
actggaattgctaccactttcatcaacaaatcctgtgatgagtcggtgctaatggacctg
aaggccctgctgatcgaggcgaagcagaaggttccacctgtgttacaggtgctgcagacg
ggagacgagaccatgctggatatcggaggggagagaggctgtaccttctgcggtggtttg
ggtcatcgcatcactgattgtcccaaactggaggccatgcagaccaaacaagtcactaac
attggccgtaaagattacttggcgcacagctcaatggacttttaa
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