Lepisosteus oculatus (spotted gar): 102688043
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Entry
102688043 CDS
T07349
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102688043 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102688043 (cpsf2)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102688043 (cpsf2)
U7-dependent histone pre-mRNA processing factors
102688043 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
102688043
NCBI-ProteinID:
XP_006632745
Ensembl:
ENSLOCG00000014102
LinkDB
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Position
LG7:32564445..32584097
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AA seq
788 aa
AA seq
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MTSIIKLTAISGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRHVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEVVYAVDFNHKR
EIHLNGCSLEILTRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLESGFSRELFIQWCRDPKNSVILTYRTT
PGTLARYLIDNPGEKIIDLEVRKRIKLEGRELEEYLEKEKMKKEAAKKLEQAKEVDVDSS
DESDIEEDLEQPSTGKAKHHDLMMKGEGNRKGSFFKQAKKSYPMFPAHEERIKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMTNGEEPMDQDLSDVPTKCISSTETLEIKARITYID
YEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCKAFSGKDIKIYTPKHQETVDA
TSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVIKVDTGVIIEEGDIKEETDE
GELPMDIASSSLTSDPSAIAQQKAMKTLFGDDEKEISEDSDIIPTLEPLPSNEVPGHQAV
FINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTETGRIGLEGCLCEDYYKIREL
LYQQYAVV
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacctccatcatcaagctgacggcgatttcaggggtgcaggaagagtcggcgctgtgt
tacctgcttcaggtcgacgagttccgcttcttgctggactgcgggtgggatgagaatttc
tccatggatataatcgacgcaatgaaaaggcatgtccatcaggttgatgcagtgcttctc
tcccatcctgatcctcttcacctgggggctcttccttatgctgtggggaagctggggctg
aactgcacaatttatgctaccatccctgtgtacaaaatgggacagatgtttatgtatgac
ttgtatcagtctcgtcataacactgaggatttcaccttgttcaccctggatgatgtggac
tcagcctttgacaaaatacaacagttgaagtattcacagattgtcaatctgaaagggaaa
gggcatggcttgtctataactcctctcccagctggtcacatgatcggagggacaatctgg
aagattgtgaaggatggggaggaggaggttgtgtacgccgttgacttcaaccacaagagg
gaaatccatttgaatggatgctctttggaaatcttgacccggccatctctgctgatcaca
gattccttcaatgctacatatgtccagcctcgaagaaaacagagagatgagcagttgtta
accaatgtaatggagactctgcggggagatggcaatgtgctgattgctgtggacacagct
gggagagttctggagctggctcagctcttggatcagatctggaggacaaaggatgcagga
ctgggcgtctattctcttgccttgctaaacaatgtcagctacaatgtagtggagttctct
aaatcacaggtggagtggatgagcgacaagctgatgagatgctttgaggacaagagaaac
aaccccttccagtttcggcacctgtccctctgccacagcctctcagacctggcccgggtt
cccagtcccaaagtggttctagccagccagccggacctggagtcggggttctcccgtgag
ctgttcatccagtggtgccgggatccgaagaactcagtcatcctgacttatagaaccact
ccgggtacacttgcgaggtatctcattgataaccctggggagaagatcatagatctggag
gtaagaaagcggataaagttagaaggccgggagcttgaagaataccttgaaaaggaaaaa
atgaaaaaagaagcagccaaaaagcttgagcaggcaaaagaggtggatgtggactccagt
gatgagagtgacattgaggaagacctggaacagccctccaccggcaaggccaagcaccat
gacctcatgatgaagggagaggggaaccggaagggaagcttcttcaaacaagccaagaaa
tcctaccccatgtttccagcccatgaagagagaataaaatgggatgaatatggagaaatt
ataaggcctgaagattttttggtccctgagctacaagccacagaggaagaaaagaacaag
ctggaatcagggatgacgaacggggaggaaccgatggaccaagatctgtctgatgtgcca
acaaagtgcatttcatcaacagaaaccctggaaatcaaggcgagaattacatacatagac
tatgagggacgctctgatggagattcaattaaaaagattataaatcagatgaagcctcga
cagttagtaattgtgcacggcccgcctgaagccagccaggaccttgctgagtcctgcaag
gctttcagtgggaaggacattaagatttatacacccaagcatcaggaaactgtggacgca
actagtgagactcatatctaccaggtgaggctgaaggattccttagtgagctccctgcag
ttttgcaaagccaaggacacagagctggcctggattgatggcgtgctggacatgagagtc
atcaaagtggacactggcgtgatcatcgaagagggagatatcaaagaggagactgatgaa
ggcgagctgcccatggacattgcctcttcttccctgacctctgacccaagtgccattgcc
cagcaaaaggcaatgaagaccctctttggtgatgatgagaaagaaatttctgaggacagc
gatatcatccccactctggagcccttgccctcaaatgaggttccagggcatcaggcggtc
tttattaacgagcccagactgtctgatttcaagcaggtgttgctaagagaaggaatccag
gctgagtttgtaggaggagtcttggtgtgtaataacctggtagctgtgcgcaggaccgaa
actggacgaataggcttagaaggctgcctctgtgaagactattacaaaatacgagaactt
ctctatcagcagtatgcagttgtttag
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