Lepisosteus oculatus (spotted gar): 102688193
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Entry
102688193 CDS
T07349
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102688193 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
loc03400
]
102688193 (msh2)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102688193 (msh2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
102688193
NCBI-ProteinID:
XP_006638841
Ensembl:
ENSLOCG00000016301
UniProt:
W5NHL1
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Position
LG16:complement(12300384..12344461)
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AA seq
932 aa
AA seq
DB search
MAVQPKQNLSMDSAAENGFVHFYYSMPEKPDTTVRVFDRNEYYTVHGKDALFAAKEVFKT
NGVIKNLGSGSRKLESVVLSKMNFESFMRDLLLVRQYRVEVYRNKASSKSGKDHDWQLAC
KASPGNLTQFEEILFGSSSPEGAAGVVGIRLGSGDGQRTVGVGYVDSTLRRLGVLEFPDN
DQFSNLEALLVQIGPKECVLPSGETQGDMTRLRQVVQQGGMLVSDRKRAEFSTKDIVQDL
NRLLRTKKGEQASSAALPEMEKQIAMSSVAAVIKYLELLSDESNFNSFEMTTLDLSQYMR
LDNAAVRALNLFQASPDDTSGSHSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNKIEERLD
LVESFFHDVELRQSCQEDLLRRFPDLNRLAKKFQRQTATLQDCYRVYQAVSQLPNLVLAL
QRYSGKHQILLNAVFITSLNDLTSDFSKYQEMIETTLDMNQVEHHEFLVKPSFDPNLSEL
REKMDQLESSMQSALNSAARELGLDAGKTVKLESNAQLGYYFRVTCKEEKSLRNNRKFTT
LDVQKNGVRFTNSKLSSLNEEYTRSREEYEEAQNAIVKEIISISTGYVEPIQILNDVIAQ
LDAVVSFAQVSNAAPVPYVRPVMLEKGSGKLSLQGARHPCIEAQDDIVFIPNDVSFIRGQ
ETFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDSAEISIVDCVLARVGAGDSTLKG
VSTFMAEMLETASILRSATEDSLIIVDELGRGTSTYDGFGLAWAISEYIATRIKAFCFFA
THFHELTALAEQVSTVSNLHVTALTTDNTLTMLYRVKKGVCDQSFGIHVAELASFPKHVI
ESAKEKALELEEFQHVERSDEGGEGPAAKRSRLDRQEGEKLIEDFLSKVKALPVSDMSEE
EIKEELKKMKADILTKNNGFVNVIVARSKNVP
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagaatctgtctatggatagtgcagcagaaaatggatttgtc
catttttattattccatgccagaaaagccagacactactgtgcgagtctttgatcggaac
gaatattatactgtgcatgggaaagatgcgctttttgcagcaaaagaagtcttcaaaaca
aatggggttattaaaaatcttggctcaggaagccgtaaactggagagcgttgttctcagt
aagatgaactttgagtcattcatgagggaccttctgttggtgaggcagtacagagtggag
gtgtacaggaacaaggccagcagcaagagtggcaaggaccatgactggcagctggcatgc
aaggcatctccagggaacctgacgcagtttgaggagatcctgttcggcagcagctccccc
gaaggggctgcaggggtggtgggcattcggctgggctcaggggacgggcagcgcacggtg
ggcgtgggatatgtggactccacgctgcggaggctgggagtcctcgagttccctgacaac
gaccagttctccaacctggaggccctgctggtgcagatcgggccgaaggagtgtgtgctg
cccagtggggagactcagggggacatgaccaggctcagacaggtggtgcagcaagggggg
atgctggtgtcggacaggaagagagccgagttcagcaccaaggacattgtccaggacctg
aaccgcctcctgcggaccaagaagggcgagcaggcgtccagcgccgcgctgcctgagatg
gagaagcagatcgccatgtcatcagtggcagctgtcattaaatacctggagctcctgtct
gatgagtccaacttcaactcctttgaaatgacaaccttagacttgagtcagtatatgaga
ctggacaacgcagcagtgcgtgcccttaacctttttcaggcctctccggatgacaccagc
ggatcccactcccttgctggcttgctgaacaagtgcaagactccccaggggcagaggctt
gtcaaccagtggatcaaacagcccctcatggacaagaacaagatagaggagaggctggac
ctggtggagtctttcttccatgatgtggagctgcgacagagctgtcaggaggacctgctc
cgccgcttcccagacctcaaccgcctggccaagaaattccagcgccagaccgccaccctg
caggactgctaccgtgtgtaccaggctgtgagccagctgcccaacctggtgctcgcactg
cagagatacagcggaaagcatcagatacttctaaatgctgttttcatcacttctctcaat
gaccttaccagtgatttctccaagtatcaggagatgatagaaaccactttggacatgaac
caggtggagcaccacgagttccttgtgaagccatcttttgaccccaacctgagtgagctg
agggagaagatggaccagttggagagcagcatgcagtcggctctgaacagtgctgccagg
gagctaggtttggatgcgggcaagaccgtgaagctggagtcgaatgcgcaactggggtat
tatttcagagtgacctgcaaggaggagaaaagcctgcggaacaacaggaagttcacgacc
cttgacgtgcagaagaatggagtgcgtttcaccaacagcaaactcagctctctgaatgag
gaatataccaggagcagggaggagtacgaggaggcccagaatgccattgtgaaggaaatc
atcagcatctccacaggttatgtggagcccatccagatcctgaatgacgttattgcccag
ctggatgcggtggtgagctttgcccaggtgtcgaacgcagcgcccgtgccctatgtgcgc
cctgtgatgctggagaaggggtcggggaagctgagcctgcagggggcgcgtcacccctgc
atcgaggctcaggacgacatcgtctttattcccaatgacgtcagctttatccgcggccag
gaaaccttccacatcatcacgggtcccaacatgggaggcaagtccacatatatcaggcag
gtgggcgtaatcgtactgatggctcagattggctgctttgtgccgtgcgactcggcggag
atcagcattgtggactgtgtgctggcacgcgtgggcgctggcgacagcacgctgaagggc
gtgtctacattcatggctgagatgctggagaccgcttcgatcctccggtcagcaacagag
gactccctgatcatcgttgacgagctgggccgaggcacttccacgtacgatggctttggg
ctggcctgggcgatctcggagtacatcgccacgcgcatcaaggccttctgcttcttcgcc
acgcacttccatgaattgacagctcttgctgagcaggtctccactgtcagcaacctgcat
gtcacggcgctgaccacagacaacacgctcaccatgctctaccgtgtcaagaaaggcgtt
tgcgatcagagtttcggaatccacgtggcagagctggccagcttcccgaagcacgtgatc
gagagcgccaaggagaaggcgctggagctggaggagttccagcatgtggaaaggtcggac
gagggcggggagggccctgctgccaagaggagccgcctggaccgacaggagggtgaaaag
ctgattgaggactttctttccaaagtcaaggcactgccagtctcagatatgtccgaagaa
gaaatcaaagaagagctgaagaaaatgaaagcagacattttgacaaagaacaacggtttt
gtgaatgtaattgttgcccgttctaaaaacgtgccatga
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