Lepisosteus oculatus (spotted gar): 102688640
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Entry
102688640 CDS
T07349
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03440
Homologous recombination
loc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102688640 (brca2)
03460 Fanconi anemia pathway
102688640 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
loc04121
]
102688640 (brca2)
03036 Chromosome and associated proteins [BR:
loc03036
]
102688640 (brca2)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102688640 (brca2)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
102688640 (brca2)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
102688640 (brca2)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
102688640 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
102688640 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
102688640
NCBI-ProteinID:
XP_015197522
LinkDB
All DBs
Position
LG3:13356206..13381301
Genome browser
AA seq
3085 aa
AA seq
DB search
MTRLSLNNEVEANSRRNIFELFTHRVSAELGPLHPHWFEDLTAEATALGAVEDGNGVCRS
SVSHCVPGSCSGSPMERAEVHSQAASTPKILGEQGFRSPEALTPEQRPVSQARAGGFGTA
EVSKREPWFDSSPGLFGLSKDSPEISHFYRRPLPTENYVGDLFDTPKGYVDFSKKRISES
LGAQVDPDMSWSSSLNTPPAITPTLILSKTEEKSCPKGLSAQKSGIIVRKLFPSVAKETD
LKLGELASENDDSTRAQLPDVNNETDDPVLKNGSFQDELADEMSSPWKQTLPDALQDPEV
RKVVASVLDGAEDVLSVFFSSSSSVRRAKTKDGDRGTPDTSPVKDCSLMAPPALVPGPSN
KVQNSELAREKDKTEKPTHSSIPVVESEAQPEITDCGNSQWSQISFPDISDSQLVCLAVS
QSSKNDPASLKGPRRSSPAGSLLLEPSPGGCLALSSSTKKPRKFVYSLQGCPLSGEPKCI
AKQKSVGNLQPVVSHSGTLRNETAGSATPSSERAMAEKKTDCSQSAKEYGLSQLSTIFAD
NFSQELNDCMTPSNSVGPAYNDILKQKPAKTCSATLGQGNKKIAINHLQNNYAPKASCAA
LNSQQQLSDLTVVQESNLVRPSQVASRISDLPQELNNSKDISDHLNGTLKSPKQSYQPTK
SSRDVSFSNEESENCLQLGFRTASNKTISLSHEAIEKAKAILDETYENDMSNTSPKKKSL
WHSQHQTLYKENVSSISDTAKDFVGPAVTHVTTESAKILQQDKISKNPESTTDTMKHDWM
QDGALDRGCNTFAISRSSKLSFPGFKTASENPIQVSSGNLERARCLFEDVDEKLLQKCIS
SGCVDVEDDRETAVEILQTGPAVKPFCTGSPSGQLSCQKMPDTYSSLTESQRADVIELCN
ILEEADTQYEFTQFKLYKETSAGTEDVLFRESHDKDTEHAPALVSDMLTVISCDGNGNTD
SNREIQKLQLMKNDTSDKAEEQCNGNEEKGGNVSISICNSMGTRDNELVEKNLANMDMMM
TLDQESSESALATGCTSSLARFEGFCSARGVKIEISKESLKKASQLLDLDVGCVQSQDSL
GLKSPIPFLDFQGKTAIRTTHYSRRPNVNTCNQTEAQFYTERASGVSQSSGKNLSHDDGT
REKLFQAGNGSSSNSKSFSNLEQQLSCGESEEQLRFEKPKALDPFPFKGSGLETRKSSES
PRNNQSEGVLQPLQFSFQLEDDVDKKLQTPQEQIGDGKDSYRSTSGKRVRFQEQSFAKVP
AVSSNAHGFKANLGFQTARGTAVRISEKFLKKAKDMFSDLEEKTESGEECPETSRTGTKE
YFGISEASKSSGKFSITRGKRASVYEEGLEGFKSIIGDNKGISVLEKHAKSEGESSRPAN
KCVGTVNNNSRFSTASGKNIFVSEKAIKEAKAVFKECDEIAMLECATDRESEVKNVSTGF
PLGEDGWIFSTGSGKEVSMSKDSLQEGVTSHECDKTETVEPVAKDYKNFQGKGTVYGIQM
SVSEKALHKDRTVLEECDGNPDSDVSVETGETVKLENGVVQKNVGKFSCGFRTARGNKVS
VSEKALQEARNLLNEFNEIENTKRDVKATSSAENLQVKSSCGFSTASGTRIPVSEKALQK
AKTVLKEYDDTPDSDVSAEIKGETVKIKNSVAQKNIEKVSCGFSTAGGKKVSVSEKALQE
ARNLLNEFNEIENTNSDVKATSSAENLQVKSSCGFSTASGARIPVSEKGLQKAKTVLKEY
DDTPDSNVGAEIKGETVRRKSSIVQNNLGKVSCGFSTASGKTVSVCEKALQNAKAKLENY
SEDENNDPNTSSPALCVKDIHGKQREEPSSECTESYKNRKTLTGPTTLKTSTKELDSSTR
ADSSAAFVLEGGKGKLETIQEGASLLNFNSHNFGDCTDTQQRYLEQEAMESTKAFLEDED
LTEESFQESLKTNSLPRVPDPQDSLEKGFRGGKRLRPQDLDLKEEPPLKRQLLAEFDRTL
DRFKHPALKPCKTCPNSVLTDRGQGRYSIPLESMISLPFGDKKRVWDITQVLKRAEPQKA
RPGLESREAKVKTGIFVPPFQKRSSSGSQKGSAPPEPSRPPSVFVPPFKKAPSSLKDAEE
VQLERLVQTAPKSTPLRETGEGCSPSVPPCETEQAVTRDSGHNESAASRELGDGSTPLSH
PSDSVRRQEVAILSVRSVDSGRPESPCSGQAVSSPEEHNASSSDHLMIQNLDFARGMQEM
RIRKKKRQTIRPLPGSLCLTKTSGVSRVSLRAAVGGKSPAQHTQQQLYVCGVNRCVLEIS
SENAESFRFSCRDHFGIEFFSAGNGVQLADGGCLIPDNKGTAGKEEFYRALCDTPGVDPK
LISESWVYNHYRWIVWKRAAMERAFPLEMGSRCLTPEQVLLQLKYRYDLEIDNSQRSALR
KIMERDDTPAKTLVLCVCRIVSMGSLQAHDTPGNKALPYAKAKTDGPVGVIEVTDGWYAI
KALLDAPLTAILRKGRLAVGGKIVTHGADLIGCQDACSPLEAPEALMLKICANSTRLARW
DTKLGFHRDPRPFHVPLSSLFSNGGRVGCVDVVVLRTYPIQWMEKKADGVFVFRGDRAEE
REARRHNENKQKTMEALFAKIQSEFEKEQEAETSEIRNRRQRFSHQEIQALQEGEELYEA
TESDPVCLEACLSEQQLMTLNNYRRALNERKQTKLQEEFQKAIRSAQDRENSCPERDVTP
VWKLLVVDCKNLQNNTAYFLNIWRPSTEVCSLLKEGCRYKIYQLATSETKRRIGNAAVQL
TAMKKTQFEQLQVPPELLCQLYASREAVSFRSLLSPRFQPVCGEVDLVGYVISITGKQGG
APVVYLVNENRDFVAVKCWVGLSQLALEDIVQPRALLAVSNVQARPSPAAAVPTAYAAEL
SVFSANPKETHLQAACTLLRSAAQGIECFFEAAEEKLSKLIKEDFPCQSLKDLSSIPKTP
IMKPDVQRESSNLVPGRSPQQSLCAFEHLTPTCGKPPLHAGRSDDKGPKSLKRKRGLIYL
SRIPSPPPLAPLRSPCVNKTFQPPRRCASPLAAARGKEECRSPGPAPEAGGEWVKDEELA
QINTQDLLAGSGDDARGEGGGKDAL
NT seq
9258 nt
NT seq
+upstream
nt +downstream
nt
atgacaagactttctctaaataatgaagtggaagcaaattcaagaagaaacatttttgaa
ttgttcacccaccgcgtcagtgcagagttgggccccctgcacccgcactggtttgaggat
ctcaccgctgaggcgacagccctgggcgcagtggaggatgggaatggagtgtgcaggagc
tccgtgtcccactgcgtcccgggcagctgttccggctcgccgatggagagggcagaggtg
cacagccaggcggcctccacgccgaagattctcggggagcagggctttcggtcccccgaa
gcattaacccccgagcagaggcctgtctcgcaggcgagagctggtgggtttgggactgct
gaagtgtctaaaagagagccttggttcgattccagccccggtttatttggattgtcaaag
gacagcccagaaataagtcatttttacagaagacctcttcctacagaaaattatgttgga
gacttatttgacacaccaaagggctatgtggatttctccaaaaagcgcatttcagaaagc
cttggagctcaagtggaccccgatatgtcatggagtagctccctgaacacccccccagct
attacaccaacgcttatactatccaagacagaagagaaaagttgccccaaagggctgtct
gcgcagaaaagtggcatcattgtgcgcaaactctttccttcagtggccaaggagactgat
cttaaattaggtgagcttgcatcggaaaatgacgattccacaagagctcaactaccagat
gtgaacaatgagacggatgatcccgtgctaaagaatggcagctttcaagatgaattagcg
gatgagatgagtagtccttggaagcaaacattgccagatgcccttcaagacccagaagtg
cggaaagtagtggctagcgtgctggatggagctgaagatgtcctgtctgtctttttcagc
agcagctcatcagtaaggagggctaaaaccaaagacggagacagagggacaccggacacc
agtcctgtcaaggactgttcattgatggcacccccagcacttgtacctggccctagtaat
aaagttcagaattctgaactggccagagaaaaggacaaaactgaaaaaccgacacattcc
tctatcccagttgttgagtcagaagctcagccagaaatcacggactgcgggaattcacag
tggtctcagatcagctttcccgatatttctgacagtcagctggtctgtcttgccgtatct
cagtcctcaaagaacgacccagcatccttaaagggtccaaggagaagcagtccagcggga
tctctgttactggagccttcaccaggaggctgtttagcattgtcttctagcacaaaaaag
cccaggaagtttgtgtactctttgcaaggctgtcccctctccggtgaaccaaaatgtatt
gcaaagcaaaagagtgtaggaaacttgcaacctgttgtttcccattcaggaaccttacgg
aatgagacggctggaagcgcaaccccttccagtgaaagagctatggctgaaaagaaaaca
gattgctcgcagtcagctaaggagtatgggctgtcacaactttccacaatctttgcagat
aattttagtcaggaactaaatgattgtatgaccccttccaatagtgtaggtcctgcttac
aatgacattctaaagcaaaaaccagcaaaaacttgtagtgctacactcgggcaggggaac
aaaaagatagcgataaatcatttgcaaaataattatgcgcctaaagcaagctgtgcagca
ttgaacagccaacagcagttgtcagaccttactgttgtacaagaaagcaaccttgtaaga
ccttcccaggttgcaagcagaatcagtgatttgcctcaagaattaaacaacagtaaggat
atatctgatcatttaaatggaacacttaaaagcccaaagcaaagttaccaacctaccaaa
tcatcaagggatgtatccttttcaaatgaagagtctgagaattgtttgcagcttggtttt
agaacagcaagcaataaaactatttctctttcccatgaggcaatagagaaggcaaaagcc
attctagatgagacgtacgaaaatgatatgagtaacacctctcctaagaaaaagagttta
tggcattcacagcaccaaacattatacaaagaaaatgtttcttctatctcagacactgcc
aaggattttgtaggtcctgcagttactcatgttaccacagaaagtgcaaaaatcttgcaa
caggataagatttccaagaacccagagagcactacagacacgatgaaacacgattggatg
caagatggtgctcttgacagggggtgcaatacctttgctattagcagatcttcaaagtta
agttttccgggctttaaaactgcctctgaaaatcctatacaagtgtcctcaggaaacctt
gagcgagccaggtgtttgtttgaggatgtggatgaaaagcttctgcagaaatgtatctct
agtggctgtgttgatgtagaggatgacagagaaactgcagttgaaattctgcagacaggg
cccgctgtaaaacccttctgtacaggatcaccttctggacagctgtcttgccagaaaatg
ccagacacttacagctctttgacagaaagtcaaagggcagatgttattgaactgtgcaat
atcctagaagaagctgacacccaatacgaattcacacagttcaaactttataaggaaact
tcagctggtactgaggatgtgctatttcgtgagtcacatgataaagatacagaacatgcc
ccagcacttgtgtcagatatgttaacagtcatcagttgtgatggcaatggaaacactgac
tccaatagagaaatacagaaactgcagctgatgaaaaatgacacatccgataaggcagag
gaacaatgtaacggaaacgaagaaaaggggggaaatgtatccatttcgatctgtaattcc
atgggaactagagataatgaattagtggaaaagaatttagcaaacatggatatgatgatg
actcttgatcaagaatcctcagaatcagctctggccactggttgtacttccagtttggca
cggtttgaaggcttttgctcggctagaggggtgaaaatcgaaatatctaaagagagtcta
aaaaaggcatcacagctccttgatttagatgttggttgtgtgcaatcacaggactcctta
ggtttaaagtctccaattccctttttggattttcagggtaaaactgctatcagaacgaca
cattatagtaggcgtcctaatgtgaacacatgcaaccaaactgaagcacagttttatact
gagagagctagtggagtctctcagtctagtggtaagaatctcagccatgacgatgggacc
agggaaaagctgtttcaagcaggtaatggttcctcatcaaatagcaaaagcttttccaat
cttgaacaacaactgtcttgtggagagtctgaagaacaattgagatttgaaaagcctaag
gctttggacccttttcccttcaagggtagtggtctggagactaggaaaagctctgaaagc
cccaggaacaatcagtcagaaggtgttttgcagcctttgcagttttcatttcagttggag
gatgatgtggataaaaaattacagactccccaagagcagataggagatggaaaggattct
tatcggtccacaagtgggaagagggttaggttccaggaacaatcttttgccaaagtgcca
gctgtgtcttcaaatgctcatggattcaaagccaacctgggtttccagactgccagagga
actgctgtaagaatttccgaaaagtttttgaaaaaagcaaaggacatgttttctgattta
gaggagaagacggaaagtggggaagaatgtcctgaaacatctaggactggaactaaggaa
tattttggaatttccgaagccagtaaatccagtggtaaattcagcataactagagggaaa
agagcttctgtttatgaggaaggacttgagggatttaaaagtataataggagacaataag
gggatatcagttctggaaaagcatgcaaaaagtgaaggagaaagttcaagacctgcaaac
aaatgtgttggaactgtgaacaacaattcaaggtttagcacagccagtgggaagaatatt
tttgtatctgaaaaagcaataaaggaggctaaagcagtgtttaaagaatgtgatgaaatt
gcaatgctcgaatgtgcaactgatagggaatcagaagtgaaaaatgtttcaactggattc
cctctgggagaagacgggtggatctttagcacaggtagtggtaaggaggtttctatgtct
aaagatagtcttcaggaaggtgtgacttcacatgagtgtgataagactgagactgtagaa
cctgtggcaaaagattataagaattttcaagggaaaggtacagtttatggcatacaaatg
tctgtttctgaaaaggcccttcataaggataggactgtgctagaagaatgtgatggcaat
ccagatagtgatgtcagtgtagaaacaggagagactgtgaaattggaaaacggtgttgtc
cagaaaaatgttggaaaattcagttgtggtttccgtacggccaggggcaacaaggtttct
gtgtctgaaaaggctcttcaagaggctaggaatttgctaaatgagtttaatgaaattgaa
aatacaaagcgcgatgtaaaagctacaagttctgctgagaatcttcaagtgaaaagtagc
tgtggcttcagtacagctagtggtacaaggattcctgtgtctgaaaaagctcttcagaaa
gctaagactgtgctaaaagaatacgacgacactccagatagtgatgtcagtgcagaaata
aaaggagaaaccgtaaaaatcaaaaacagtgttgcccagaaaaatattgaaaaagtcagt
tgtggtttcagcacagccggtggaaaaaaggtttctgtgtctgaaaaggctcttcaggag
gccaggaatttgctaaatgagtttaatgaaattgaaaatacaaactctgatgtaaaagct
acaagttctgctgagaatcttcaagtgaaaagtagctgtggcttcagtacagctagtggc
gcaaggattcctgtgtctgaaaaaggtcttcaaaaagctaagactgtgctaaaagaatat
gatgacactccagatagcaatgtcggtgcagaaattaaaggagaaactgtgcgacgaaaa
agtagtattgtccagaataatctaggaaaagtcagttgtggtttcagcactgctagcggc
aagactgtttccgtttgtgagaaggcccttcagaatgccaaagcaaagcttgagaactac
agtgaagatgaaaacaatgaccccaatactagctctccagccctctgtgtgaaggacata
catggaaaacaaagggaggagccgagttcagaatgtacagaatcttacaagaataggaaa
actcttacagggccgaccactttaaagacatccacgaaagaattggactcttctacaagg
gctgactcatcagctgcatttgtattggagggtggaaaaggaaagttagaaaccattcaa
gaaggggcttctctcctcaactttaattctcacaactttggggactgcacagacactcag
caaaggtacttggagcaggaggccatggaatctaccaaggcttttttggaagatgaggat
ctcactgaggagagctttcaggagtctctgaagacgaatagtcttcctcgtgttccagac
ccgcaagactctttggaaaagggctttagaggtggaaaaagacttcgaccccaagatctt
gatttaaaagaggaacctcctcttaaaaggcagctcttggcagaatttgacaggaccttg
gatcgtttcaaacaccctgcgctcaagccttgtaaaacctgcccaaacagtgttctaaca
gaccgaggacagggcagatatagcatccccctagaaagtatgatttctcttcccttcggc
gataaaaagagagtttgggacatcacccaggtgctgaagagagcagagccgcagaaagct
cgcccgggcttggaatcccgagaagcaaaggtcaaaaccgggatctttgtgccgccattt
caaaagcgctcgagctccgggtcgcagaagggcagcgcgccacctgagccaagcagacct
cccagtgtttttgttcctccctttaaaaaggcaccgagctcccttaaagacgcggaagaa
gtgcagctggagaggctggttcagacggcccctaaatccacccccttgcgtgagactggc
gaagggtgcagtccgtctgtccctccttgtgaaacggagcaggctgttaccagagactct
ggacataacgaaagtgcagccagccgggagttaggagacggcagcacacccttatcccac
ccaagcgatagtgtccggagacaggaagtagccatactcagtgtgaggagtgtggattct
gggaggccagagagcccctgctccgggcaagcagtgtcttcccctgaagaacacaacgcc
agtagttcagatcatctaatgattcagaatctggacttcgcccgaggcatgcaagaaatg
aggattcggaaaaaaaagcggcaaaccattaggcctcttccggggagcctgtgcctgacg
aagacctccggggtgtccagagtgtcgctccgcgctgcggtgggaggaaagagccccgct
cagcacacacagcagcagttgtacgtgtgtggggtcaataggtgtgtgttggagataagc
agtgaaaacgctgagtcgttcaggttcagctgcagagatcactttggaatcgagttcttc
tcggctggtaatggggtgcagcttgctgatggaggctgccttatacctgacaacaaaggc
acagcagggaaagaagagttttacagggctttgtgcgacacgccaggcgtggaccccaaa
ctgatcagcgagagctgggtttacaatcactaccggtggatcgtgtggaagagggcagcc
atggaaagagcctttccgctggagatgggaagccgatgtctaactcctgagcaggttctc
cttcagctgaaatacaggtatgacttggaaattgataacagccagaggtcggccctcagg
aagatcatggaaagggatgacacacctgcgaaaaccctggtgctctgcgtctgcagaatc
gtctcgatggggtcactccaggcgcacgatacgcctggaaacaaagccctgccgtacgcc
aaggccaagacagacgggccggtgggggtcattgaagtcaccgatgggtggtacgccatt
aaggccttgctagacgccccgctcacagccattctgcggaaaggaagactcgctgtcggt
ggcaaaatcgtgactcatggagctgatcttataggctgtcaggacgcctgctcgcccctg
gaggcacctgaggccctcatgctgaagatttgtgccaacagcactagactagcccgctgg
gataccaagcttggttttcaccgagacccccgtcccttccatgtcccgctgtcctccctc
ttcagtaatggcggtagagtgggatgtgttgatgtagtggtgctcagaacttacccgata
cagtggatggaaaagaaggcagatggagtctttgtgtttcgtggtgatcgtgctgaagaa
agagaggctcgaaggcacaacgaaaacaagcagaaaactatggaagctttatttgctaag
attcagtctgaatttgagaaggagcaagaagcagaaacaagtgaaatcaggaacagaagg
cagaggtttagtcatcaggagatccaagcactgcaggagggcgaggagctttatgaggcc
actgaaagtgatccagtatgccttgaggcttgtttaagtgagcagcagctgatgacactg
aacaactaccgacgggctctgaatgagagaaaacagacaaaactgcaggaggagtttcaa
aaagccatacggtcagcccaggacagggagaacagctgtcctgaaagagatgtcactcct
gtgtggaaattattagttgttgactgtaagaatctgcaaaataacactgcttactttttg
aatatctggcgcccgtctacggaagtctgttccctgctgaaagaaggctgcaggtacaag
atataccagctggcaacatctgagaccaagaggcgtatcggcaacgcagcagttcagctc
acagctatgaagaaaacacagtttgagcagttgcaggtacccccggaattgctgtgtcag
ctgtatgcatccagagaggccgttagtttcaggagcttgttgagtccgcggttccagcct
gtttgtggagaggtggatttggtgggttatgtcatctccattacaggaaagcaaggtggt
gctccagtggtgtacctggtcaatgagaaccgggattttgtggcggtgaagtgctgggtc
ggcctgagccagctggcattggaggatattgtacagccacgcgccctgcttgcagtgagc
aacgtgcaagcgcgacccagcccagctgcagctgtccccactgcctatgctgcagagctt
tcagtcttctccgcaaaccctaaagaaacgcatctgcaagcggcttgcaccctgctgagg
agcgcggcccagggtattgaatgcttttttgaggccgctgaagagaagctcagcaagtta
atcaaagaagacttcccatgtcagtcgctaaaagacctcagttccatccccaaaacgcct
attatgaagcccgatgtacaacgggagagcagcaatcttgtcccgggaagatctccacag
cagtcactctgtgcttttgagcacctgactcccacatgtggcaaaccacccctgcacgct
ggccgctcggacgacaagggccctaaaagcttgaagaggaagaggggcctaatctatctg
tcccgaatcccgtcccctcccccgctcgccccactgaggagcccctgtgtgaacaagacc
ttccagcccccgaggaggtgcgcgagccccctggcggcggcgagggggaaagaggagtgc
cgaagtccgggcccggcgccggaggcggggggcgagtgggtgaaggacgaggagctggcg
cagatcaacacccaggacctgctcgccggctcgggggacgacgccaggggcgagggggga
gggaaagacgccctgtga
DBGET
integrated database retrieval system
