Lepisosteus oculatus (spotted gar): 102688798
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Entry
102688798 CDS
T07349
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
loc03036
]
102688798 (hfm1)
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
102688798 (hfm1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
102688798 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
ResIII
Helicase_C
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
102688798
NCBI-ProteinID:
XP_015210858
LinkDB
All DBs
Position
LG10:complement(6778292..6805105)
Genome browser
AA seq
1519 aa
AA seq
DB search
MIYVCCQKRNQGWMYNSHGEDGFMKWRLWNMAGPEDCTLSLDGLFFEGPVTQKTKPQYQG
QGSWQLEPPPLASEIPGTQELQEELVTLRSYSSSQTIRKFIPPLKKTDGTKNISAQRSDF
QKTIGPFSLLEKEDSHLDRDENSNVPKTQRSDQLFGEKTSNNGESSQLRRSLFKCPQTAS
ASDRQHCPSVVKRGARSNGFNDGVTKVSQEAFMTSADNSQSSIRGPCASGGCASTAAKQS
TKTAHVLPLTPQPLNVRGGLGMESGVLRAVTEIPAQYRSVFKEFPYFNYIQSKALDDLLY
TGKNFVACAPTGSGKTVLFELVIIRLLMEEQAPWSHIKIVYMAPIKALCSQRYENWKQKF
GPLGLNCKELTGDTEIDDFFEIQDAHLIMTTPEKWDSMTRKWSGNCLVQLVRLFLIDEVH
VVKDETRGATLEVVVSRMKAMRSSLSHGAQTPESKTSVRFVAVSATIPNIKDIADWLSDG
GEPAVCLEMDEEHRPVKLRKVVLGFPCSSNQTEFKFDLSLNYKIASIIQTYSDQKPTLVF
CATRKGVQQSASVLAKDARFIMSIEHKQRLMKYADVIHDSKLRDLVMYGIGFHHAGIDLS
DRKLIEGAFTMGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYVGGMFQEYSETDILQMIG
RAGRPQFDTTATAVIMTRSQTKDRYTHLVSGDETTESSLHKHLVEHLNAEIVLHTFSDVN
GALDWIRSTFLYIRALKNPSYYGFPPALNKAGIEAELQELCLRNLNALSSIGLITMDEDI
NFKTTETGKIMARYCIAYDTMKQFTLVSGTETLSDLIRLISKGKEFSDVQLRVSEKRTLN
TLNKDKNRVTIRYPIEGKIKTNEMKVNCLIQAQLGCIAVQEFGLTQDIGKIFRNGTRVTK
CLSEILGHQAKRNFSALLNSLILAKCFRSRLWENSPFVSKQLEKIGLTLSTAMVNAGLTS
FQKIEEINARELELIVNRHPPFGNQIREAVIHLPKYEVSLEQVPKYSVSTAEVIITVILT
NYKQLLLKRTAPDNHYVSLLIGDSDNQVLFHQKLTDSLLLRSGSWSKKTEITRAHADEQI
CVNLISSEYVGLDIQQTYSVFYSGPKRFRAHVNSWQSQQQHSVPATAETCALTASAQPVP
DRGSSKEIIYRDPGIRQCNHYCKNKEQCGHDCCKVGVVVVQRSVKNPESIFSSYLSDLKS
RTESLAETPVKRLKMKMSNDTGAVDLHRFSYKQNDGMPTGSRRCERNQAFMPTKVEALES
FDSFTTSQQRGEQQCCERDYDMGCYTANSHSWIVPEPDEELLSQNTEEAKNANFSVWKQS
DTGSKVNTPQNNTGYSENQRVRDADESGCFSEAMRVTFDLGVDDWSDIDDENLVQVSELS
DAQIPRPGLKKATAFSASLYSKIGQTTSFKECKGTTYNDIIPQVSKCTPALTCTSDDKSS
QSRSFSDAKPKIHTEQSENRMVLSCPRRNVTNSSAVLGKFDFFSHLHAASAVSEGSGRFE
REDSATEVSAFLGIFDGIF
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atgatttatgtatgctgccagaaaaggaaccagggttggatgtataattcacatggtgaa
gatggatttatgaagtggagattatggaatatggcgggacccgaagactgcacattatct
ttggacggtctgttttttgaaggaccagtgactcagaagacaaaaccacaatatcaaggg
caaggatcttggcaacttgaacctccgccactggcgtctgaaataccaggtactcaggaa
ctgcaggaggaattagtaacacttcgctcttacagttcttcacagacaataagaaaattc
ataccacctttgaaaaaaacagatgggactaaaaatatttctgctcaacgcagtgatttt
caaaagacaataggacccttcagtttattagaaaaggaggattcacatcttgatcgagat
gaaaacagtaatgtacctaaaactcagcgttcagaccagctgtttggtgagaaaacatct
aacaatggagaaagctcacagttaaggagaagcttgtttaaatgtccccagactgcctca
gcttcagacagacagcactgcccttcagtcgtgaagagaggagcccgaagcaatggcttt
aatgatggagttactaaggtgtcacaggaggctttcatgacatctgctgataactctcag
agctctataagaggtccgtgtgcttcgggtggttgtgcttccacagctgcaaaacagagc
acaaaaacagcccatgtccttcccttgactccacagccacttaatgtacgaggtggatta
ggcatggagtcgggagtcctccgggcagtgactgaaatccctgcacaatacagatcggtt
ttcaaagaattcccctatttcaattatatccagtctaaagcactggatgaccttctttac
actggtaaaaattttgttgcttgtgctccaacgggctctggaaaaacagtactgtttgag
ctggtgattatccgactgttgatggaagagcaagcgccctggtcccacattaagattgta
tacatggcaccaattaaagccctctgcagtcaacgttatgaaaactggaaacaaaaattt
gggcctttagggttgaattgtaaggagctcacaggggatacagaaattgatgacttcttt
gagattcaagatgctcatctcatcatgactacgccagaaaaatgggacagcatgacaagg
aagtggagtggtaattgtttggtccagctggttaggctcttccttatagatgaggtccat
gttgtaaaagatgaaactcgtggggcaactctcgaggtggtagtgagcaggatgaaggcg
atgcgttcttccctttctcacggtgcacaaaccccagaatcgaagacctccgtgagattc
gtggctgtttctgcaacaattccaaacatcaaagatattgcggattggctgtcagatggt
ggtgagccggccgtttgtttggaaatggatgaagaacacaggcctgtgaagttaagaaaa
gttgtgcttggatttccctgctccagcaatcaaactgaatttaagtttgatttgtctctt
aattacaaaatagcaagcatcatccagacctattctgatcagaaaccaacacttgtgttt
tgtgcaacaaggaagggtgtacaacagtctgcatctgttcttgccaaggatgccagattc
ataatgagcattgaacacaaacaaaggttgatgaagtatgcagacgtgattcatgactcc
aaactaagagatctagtgatgtatggaataggattccatcatgctggcattgacttgtct
gacagaaaattaattgaaggtgcttttaccatgggagacctaccagtactttttacaaca
agcaccttagctatgggagtgaacctgcctgctcacttggtggtgatcaagtccaccatg
cattacgtaggaggcatgtttcaggagtacagtgaaacagacatccttcaaatgatagga
agagctgggaggccccagtttgacaccacagctacagcagtgattatgaccagatcccag
acaaaagacagatacactcatctcgtaagtggagatgaaacaactgaaagcagcctgcac
aaacacctggttgaacatttaaacgcagagatagttcttcacacgttctctgatgtaaat
ggtgcactggattggatacgttctacattcctgtacatcagagccttgaagaaccccagc
tattatggttttcctcctgcattaaacaaagctggaatagaagcagaattgcaagagctc
tgtctgaggaatctgaatgctctgtcttcaattggcctgattaccatggatgaagacata
aattttaaaactactgagactgggaagattatggcacggtattgcattgcctatgacacc
atgaagcagttcaccttagtttctggaacagaaacattatctgacctgatcagactgata
tccaaagggaaagagttttctgatgtgcagttaagagtgagtgagaagagaactctgaac
acgctgaacaaagataaaaacagagtaacgatcaggtacccaatcgagggaaagattaaa
accaatgaaatgaaagttaattgtttaattcaggctcaacttggatgcatcgcagttcaa
gaatttggtttgacgcaggatatagggaaaatattcagaaatggaaccagagtaactaaa
tgtttgtcggagattcttggccatcaagccaagaggaacttctctgctctgctcaattct
ttgattctggccaagtgttttcgttccaggctatgggagaactcaccgtttgtttcaaag
caactggagaaaataggattaacgctatcaacagcaatggtcaacgctggtctgacatca
tttcagaagattgaagaaataaatgcaagagaactggagctgattgtgaacagacatcct
ccttttggaaaccaaataagggaagctgtcattcaccttccaaagtacgaagtcagtttg
gaacaggttccaaaatatagtgtttcaactgcagaggtgattatcacagtcatcttaaca
aactacaagcagttgctgttgaagagaacagccccagacaaccattatgtcagtttgctt
ataggggattctgataatcaagtgcttttccatcagaaactcactgattccctgttactg
agatcagggagctggtctaaaaaaactgagattacaagggcacatgcagacgaacaaatt
tgtgtgaaccttattagttcagagtatgtgggacttgacattcagcagacatacagtgtt
ttctactcgggtccaaagagatttagagctcatgtgaacagctggcagagccagcagcag
cacagtgttccggccacagctgagacatgtgccctgactgcctcagcacagcctgttccg
gacagaggttcttccaaagagatcatctaccgtgatcctgggataagacaatgcaaccat
tactgtaaaaacaaggagcagtgtggacatgactgctgcaaggttggtgtggtggtggta
cagcgaagtgttaagaatccagaatccattttttcttcataccttagtgatcttaaaagc
aggaccgaatcactagcagaaacacctgtcaaacgtttgaagatgaaaatgtctaatgac
actggagctgtagaccttcaccggttctcatataaacagaatgatggaatgccgactggt
tcaagaaggtgtgagaggaaccaagcttttatgccaacaaaggtggaggctctggaatct
tttgatagtttcacaacatcgcaacaaaggggagagcagcagtgctgtgaaagagactat
gacatgggatgttacactgccaactctcacagctggatcgtcccagagccagatgaggaa
cttctcagtcaaaatactgaggaagcgaaaaacgcaaatttttcggtgtggaagcagtct
gatactggaagtaaagtcaacactccacaaaacaacacaggttactctgagaatcagagg
gtaagagacgcagatgaaagtggatgcttctcagaagctatgcgtgtgacattcgatctt
ggagtggatgactggagtgatattgacgatgagaatctggtacaagtcagtgagctttct
gatgcacagataccacggccaggattgaagaaagcaacagcgttttcagcatctttgtac
tccaagatagggcagactacatcattcaaagaatgtaaaggaactacatataatgacatt
ataccgcaggtgtctaagtgcacacctgcacttacctgcacatcagatgataagtcatca
cagtccaggagcttctcagatgcaaaacctaagattcatactgagcagagtgagaacagg
atggtgctttcatgccccagacggaatgtaacaaactcatcagcagttttggggaaattt
gattttttctcccatttgcatgctgcaagcgcagtatcagaaggcagtggcagatttgag
agggaagacagcgccacagaagttagtgcttttcttggaatatttgatggaatattttag
DBGET
integrated database retrieval system
