Lepisosteus oculatus (spotted gar): 102688852
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Entry
102688852 CDS
T07349
Symbol
jmjd1c
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
loc03036
]
102688852 (jmjd1c)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102688852 (jmjd1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
C1_2
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
102688852
NCBI-ProteinID:
XP_015202178
Ensembl:
ENSLOCG00000006879
UniProt:
W5MIW4
LinkDB
All DBs
Position
LG5:complement(10591668..10691766)
Genome browser
AA seq
2614 aa
AA seq
DB search
MAVEARPELVGKRFLCVSGEELPELGEIGRWGWRAGVIRAVSHRDNDNPELTVYVEFDDL
EWEKREWVKVYEDFRIFLLEHQLVWAKQKENGQLQGTKHKQTQWPALTFKPLVGKAVLGS
ITAVEFFADRQLDFLTEDGTYQPYQDEVDSLNPVLRDNPQLHEEVKAWVKEQKVQEIFMQ
GPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRTMIVMNDQVLEPQNVDPSMVQMTFLD
DVVHSLLKGENIGITSRRRSRSSQNSNTAHTTGGRLTSSTGSNQGHYTRAQANSPRPVMN
SPTTTPKQAQQQQQIQQQQQIQQQQQQQQQQQQIQQQQQQQQQQQQIQQQQQQQQSPLQH
RASRSSRRKGSDSSVPDEDKIKEEKLDNGGRGDISKTKTKQIMNKRRKPEEDEKKVGLKK
LKADNVSDFSESSDSENSNKRIIDSSSEQNSENELRTKSTSKASEEEDKSQGSKGAVETT
LIDRHSPWDEREDEQIPKVLQSADCELQEEKSQHQPANPPTPCDPNVSTPDVQGCIVEMK
STVKTLPKDHYANSAPQTATPKCVIDITADNNTNNGSQENSEAVSALLASQKSESYISES
RHLVLNPSVSDGRKPEIEQQMAHSLGSKIEFAHSEIIKPVASVSESAAVAEKEKLHYSSI
MPCISNASIAEESRRSHKLSPSPELHKPKSNPSPETLKPKCNPSPDVLKSKAHSLLDTSK
PKPNISPEVSKHKVRYQDNQAAGAGAANRPANKAEPDVPRSSFKPVPARVSQAEPTKSPL
IIDKNEHFTVYRDPALVRPETETNPIAYLHQHLHPLHASSHATCLTATTHHPSHLLPGSS
PQAPMAAINAHALSSASHHSVHHPHLLPTVLPGMPTASLLGGHPRLDSGHASGLGHLTLA
HHHSHQQQQFLQQQAPHLLTQTHTSASYNQLGLYPIIWQYPNGTHSYAGLGLPSSKWVHP
ENAVNSEASLRRNTPSPWLHQHTPVTSADSLGLLSHGPVRPASADPHRPIKINAHTSPPL
SKAAGELHKEELEKKTFMDPMRAITPAHIKAEQDHSRTSTGKDSHLHRHFLDPISSHCKP
QRVTQDTGDRVNKYKEENRKILQESIEVAPFTAKIKSNEGERDSYPRIPSLPTAGPKSHV
IKPDKDTEHSAAELYKFKHTVPQSLPQSNYFTTLSNSVVNEPPRLYPSKDGNSYFEKVNS
SQLAASNPMTLASFSSKSLSKPPPLIKHQTEGEGLMSKITEQFSQQVASHPLSASGNERR
SPAIAPSNPLRCMPALHRAPVFHPPTQQTLDRKEGSYGRLSPPTLTPIQPVSSAGKISEQ
QKPPTLIPELRDLNAVNKNSSEMTSSEIWKAGDSQNHEKPGWHLEKSSGKPQAATASVIV
RPPTCIKYDSLPGPKTVSKEPVTERSFTGTNQTDCFKAAEGREPGRVILPNTNLEDTCTQ
YKKNSLTISQGSISNCMVASANSVCSTKTDVTTSAATTTSVLSRVESDMTYSLSTTVSAS
TRTEVAGLKAGAHSVAEQQEGKTQTTSPSTVLPPNTGSTTQASAGHSYSSTFFHLKKHKL
AAAQSRSTNANESEPVNAKIQKCSMAISQDSGVLSNTINKTSSLTNGQPAQLSQPNYHTK
LKKAWLTRHSEEDKNTNKTEKLGSAVSEIIKPCTVSLIASTSSDVENNKESKGQDDRLAQ
EDRKTRRGTKRTYESGSESDDSDGSESKSEQRAKRQPKPTYKKKQNDMQKKKSDNEKEED
EVKPNGIFRSAREKTKLKLASSNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQ
KCRECRVIRSKKGEEPAHSPVFCRFYYFRRLSYSKNGVIRIDGFSSPDQYDDEAISLWAP
DVYEDNDLDLETSKYILNYIGDKFCQLVVSENTAVTWIKKDAKIAWKRAVRGVREMCDAC
EATLFNIHWVCQKCGFVVCLDCYKAKERKSSKDKELYTWMKCVKGQPHDHKHLMPTQIIP
GTVLTDLVNAMHSLRDKYGMKSHCPCAVKQNTPLSKIPSTNGVSQVLQNVLNHSNKISFC
KPELQQQNASQKLETNGGGSPGGDASADSKPAPPESQSPLHFLADLAEQKSREEKKENKE
SPVGKPAKEERDSDRLEALNCRSSSLVSNSSEQGSSLRDLLTTTAGKLRLGSTDAGIAFA
PVYSSGTQTGKSGRSMPNILDDIIASVVENKIPANRSSKFNLKHEANEETKHDRKKPIAE
EPSKLYPDIPHSWLCDHRLLWLKDHRNCNNWKLFRECWKQGQPVLVSGVHKRLNANLWKA
ESFNHEFADHQGDLLNCKDGVVSNSSIKEFWDGFEDLTKRPKSKDGESLVYRLKDWPSGE
EFMALMPSRYDDLMKNLPLPEYSDPEGHLNLASRLPSFFVRPDLGPRLCCAYGVAASKEQ
DFGTANLHLEVSDIVSILVYVGVAKGNGVLSKTGVLKRLEEEDLDDNMKKRLKDSSETPG
ALWHIYVSKDAEKIKEFLQKVAKEQGLELPPEHDPIREQSWFLSQKLRRRLLEEQGVQGR
TVVQFLGDSVMIPAGALHQVQNLHSCVQVINDFVSPEHVVHSFHLTQELRSSKEEINYED
KLQVKNIFYHSVKDAVGTLKRCCGEEMDRAEENS
NT seq
7845 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaagcgcggccggagctggtcgggaagcggttcctgtgtgtcagcggagag
gagctgccggagctcggggagatcgggcgctggggatggagagccggggtcatccgcgcc
gtctcccaccgcgacaacgacaacccggagctcacggtgtatgtcgagtttgatgacctt
gaatgggagaagcgcgagtgggtcaaagtttatgaagatttccgaatattcttgttggag
caccagcttgtgtgggcaaagcagaaggagaacggtcagcttcagggaacaaagcataag
cagacgcagtggcctgccttgacattcaagcctctggtgggaaaggctgttctgggctcc
atcactgcagtggagttcttcgcagacaggcagttggacttcttgaccgaagatggcacg
tatcagccctatcaggatgaagtggacagtttgaatccagttctcagggacaatcctcag
cttcacgaagaagtgaaagcctgggttaaggaacaaaaggttcaggaaatttttatgcaa
ggtccctattcgttaaatggatatcgagtacgagtttatagacaagattcagctacgcag
tggttcacaggcatcatcacccatcacgatctcttcagccgcactatgattgtgatgaat
gaccaggtactagagccacagaatgttgatccttctatggtacagatgacctttttggat
gatgtcgttcattctctgctgaaaggtgaaaacattggaattacatccaggcgcaggtct
cgctccagccagaacagcaatacagctcacaccacaggagggagactgaccagcagcaca
ggaagcaatcagggtcattacacacgtgcccaagcaaacagccccagaccagtcatgaat
tctccaaccaccacgccgaaacaggcgcagcagcagcagcagatacagcagcagcagcaa
atccagcagcagcagcagcagcagcagcagcagcagcaaatccagcagcagcagcagcag
cagcagcagcagcagcaaatccagcagcagcagcagcagcagcagtcgcctctccagcac
cgtgcttcacgctccagcaggaggaagggatccgacagcagtgtgccagatgaagataag
ataaaagaggaaaaacttgacaatggagggcgaggagacatttcaaaaactaaaaccaag
caaattatgaataaaagaagaaaacctgaagaggatgaaaagaaagtgggtttaaaaaaa
ctgaaggcagacaatgtctcagatttttctgagagcagcgactctgaaaactccaataaa
agaatcatagattcttcctcagagcaaaactcagagaatgagttaagaaccaaaagcact
tcaaaggctagcgaagaggaagacaaatcccagggtagcaagggggcagtggagacgact
ctaatagatagacactctccctgggatgaaagagaggatgaacaaattccaaaagtactt
cagtcagctgactgtgaactgcaagaggaaaagtctcagcaccagccagccaatccaccc
actccctgcgatccgaatgtcagtactccagacgttcaggggtgcattgtggaaatgaaa
agcactgtgaaaactttacccaaggaccattatgctaacagtgcaccacagactgctaca
ccaaaatgtgttatcgatataactgcggacaataacacaaataatgggtctcaggaaaat
tctgaggctgtttctgctttgctggcttctcagaagtcagaatcatatatatcggagtcc
agacatttagtgttaaacccttccgtttcagatggcaggaagccagagattgaacaacag
atggcacatagccttggcagtaagatcgagtttgcccattcggagattataaaaccagtt
gcatctgtcagtgagtctgctgctgtagctgaaaaagaaaaactacattattcctccatt
atgccatgcatttcaaatgcatccattgctgaagaaagtagaaggtctcacaagttgagc
ccctctccggagcttcataaacccaagtcaaacccttctcctgaaactctgaagcccaag
tgtaatccctctcctgatgtcctgaagtctaaagcccacagccttttggatacttccaaa
cctaaaccaaatatatccccggaggtttcgaagcataaagttaggtatcaggacaatcaa
gcagctggagctggagctgccaacaggccggcgaataaagccgagcccgacgtgcctcgc
tcaagcttcaagcccgtgcctgctcgagtgagccaggctgaacccacaaagagccctctc
attattgacaagaatgagcacttcacagtctacagggacccggctctagtcaggccagag
accgagactaaccccattgcctatttgcaccagcatcttcaccctcttcatgcctcttcg
cacgcgacgtgtttaaccgccacgacccaccacccatcgcatctcctccctggatcctca
cctcaggcacccatggctgctattaacgcccatgctctgagcagtgcttcgcaccactct
gtccatcaccctcatcttcttccaacagtgctacctggaatgcccacggcctctctgttg
ggtgggcatcctcgcctggactctggccatgccagcggtctggggcatttaactctagcc
catcatcactcacatcagcagcagcagtttttacaacagcaggctcctcaccttctgaca
cagactcacaccagtgcttcatataaccagcttgggctctatcctatcatttggcagtat
ccgaatggcacccactcttatgcaggacttggactgccttcttcaaagtgggtgcatcct
gaaaatgcagtgaactcagaagccagtttgaggaggaacacccccagcccctggctccac
cagcacacacccgtgacctccgcagacagcctggggctgctgagccacggccccgtcaga
cctgccagcgcagaccctcaccggccaatcaagatcaacgcacacaccagtcccccgctg
tccaaggcagctggagagcttcacaaagaggagctggagaagaagaccttcatggacccc
atgcgagcaattactccagcacatataaaagctgagcaagaccacagcagaacatccacg
ggcaaagacagccatttgcacaggcacttcttggaccctatctctagtcactgcaaaccg
cagagagtaacacaagacactggggacagagtgaacaaatacaaagaggagaaccgcaag
attcttcaggagagcattgaggtagccccctttacagccaagataaagtcaaatgagggg
gagagagattcttaccccaggataccttccttacccacagctggtcctaaaagccatgtc
attaaaccagacaaagacactgagcactctgcagcagaactctacaaattcaagcatacg
gtgccacagtctttgccccaaagtaactatttcactaccttgtccaacagtgtggtgaat
gaacctccaagattatatccatccaaggatgggaattcttactttgagaaggtgaacagc
agccagttggcagcatctaatcccatgaccttggcttcttttagcagcaagtccctctca
aaaccccctcctctgatcaagcatcagacagagggagagggactaatgagcaaaatcaca
gagcagttttctcagcaagtggcttcacatcctctcagcgcttctggtaacgaaaggagg
agtcctgcaatagcgccttcgaaccctctcagatgcatgccagcattacacagagctcca
gtgtttcatcctccgactcagcagaccttagaccgaaaggagggcagttacggtagactt
tctccaccaacgctgactccgatccaaccagtaagctcagctggtaaaatctctgaacag
caaaaaccaccaacactgataccggaactaagggacttgaatgctgttaataaaaacagt
tctgagatgacttcatcagagatctggaaagctggtgactctcaaaaccatgagaaacca
ggatggcatttagaaaaaagcagtgggaagccacaagcagcaacagcatctgttattgta
cgcccacctacgtgcataaaatacgatagcctgccaggaccaaagacagtatccaaggaa
ccggtcactgagagatcgtttacaggaacaaatcagacagattgcttcaaagcagcggaa
ggcagagagcctgggagagtcattctgccaaacacgaacttagaggatacttgcacacag
tataagaagaactctctaacaatatcccagggaagtatttccaactgtatggtggcttct
gccaattctgtgtgcagtaccaaaactgatgtaaccacttctgcagccacaactaccagt
gtcttgagtagagttgaatcagacatgacttactcgctgtcgaccactgtctcggctagc
actagaacagaggttgctggccttaaagctggagctcactcagtagcagaacagcaggag
ggaaagacccaaaccacatcccctagcacggttctgccacctaacacaggaagcactaca
caggccagtgcaggccatagttattcaagcacatttttccatttgaaaaagcacaagctg
gccgcagctcagtccaggagtactaatgctaatgaaagtgagcctgtcaatgctaaaatt
cagaagtgctcaatggccatttcacaggatagtggtgtactgagcaacacaataaacaaa
accagctctttgactaatgggcagcctgcgcagctgagccagcccaactaccacacaaag
cttaaaaaagcttggcttacaaggcattcggaagaagataaaaacactaataagacggag
aaactggggagcgctgtgtcagagattattaagccgtgcactgttagtttaattgcgtcc
acatcaagcgatgtggaaaataacaaggaaagtaaagggcaggatgacagacttgcacaa
gaagacaggaaaacaagaaggggaaccaaaaggacttatgagtcaggctctgagagcgat
gactcagatggaagtgagagcaaatctgagcaaagggctaaacgtcagcccaagcctaca
tacaaaaagaaacagaatgacatgcaaaagaaaaagagcgacaatgaaaaagaagaggat
gaagtaaaacccaatggtatttttagaagtgcaagggaaaaaacaaaactgaagttggca
agcagtaatggaatacctcgttcagtattaaaggactggaggaaggtgaagaaactgaag
cagacaggagaatctttcctccaggacgattcatgctctgaaataggacccaaccttcag
aagtgcagggagtgtagggtcatccgcagtaagaagggagaagagcctgcacactcccct
gtcttctgcaggttttactatttccgtcgcctttcttacagtaagaatggagttatcaga
atagatggcttttcctcaccagaccaatatgatgatgaggcaatcagcctctgggctccg
gatgtttatgaggacaatgatcttgacctagaaacgtccaaatatattctgaattacatt
ggagataaattttgtcagcttgtagtgtctgaaaatacagctgtgacatggattaaaaaa
gatgccaaaattgcctggaagagggcagtaagaggagtgcgggagatgtgtgatgcatgt
gaagccacattgtttaacattcactgggtctgccaaaaatgtggatttgtggtttgtttg
gactgttacaaggcaaaggaaagaaagagttccaaagacaaagagctgtatacgtggatg
aagtgcgtcaagggacagcctcatgatcataagcacttgatgccaacacagattattcca
ggaactgtattgacggatctggtcaatgccatgcactcgctccgagacaagtacggaatg
aaatcgcactgtccttgtgctgtgaaacaaaatactccgcttagcaagatcccttctacc
aatggagtctcgcaggttttgcagaatgtcctcaaccacagcaacaaaatctctttctgc
aagccggagctgcagcagcagaacgcctcgcagaagctggaaacgaacggcggcggcagc
cctgggggcgacgccagcgctgacagcaagcccgcgccgccggagtcccagtcccccttg
cacttcctcgcagatctagcggagcagaagtctagggaggagaagaaagaaaataaagaa
tcccccgtgggaaagccagcgaaggaagaaagggactcggatcgcttagaggcgctgaac
tgccggtcgtcttcgctggtgtcgaacagcagcgagcaaggctccagcctgcgggacctg
ctcaccacgacggccggcaagctgcgcctcggctccaccgacgcgggcatcgcgttcgcc
cccgtttactcctcgggcacacagactggcaaaagtggaagaagcatgcccaacatcctg
gatgacatcatcgcttcggtcgttgaaaacaagattcccgcgaacagaagctccaagttc
aacctgaaacacgaagcgaatgaagagactaaacacgacaggaaaaagcctatcgccgag
gagccaagtaagctgtatcccgatatcccccactcctggctctgtgatcaccgtctgctc
tggctcaaagatcatcggaactgtaacaactggaaactcttcagggagtgctggaagcaa
gggcagcctgttcttgtgtcaggtgtccataagagactaaatgccaatttgtggaaagct
gagtcatttaaccatgaatttgctgaccatcagggagatctcctaaactgtaaagatggt
gtggtttcaaactccagcatcaaggaattctgggatggatttgaggatttaacaaagcgg
cccaagtccaaagatggcgagagtttagtgtatcggctaaaggattggccttctggagaa
gaatttatggctctcatgccctcaaggtatgatgatttgatgaaaaatctccccctgcct
gaatattcagacccagagggtcatcttaacttagcatcccgtctgccatcattcttcgtc
cggccagatctagggcctaggctctgttgtgcatacggtgtagcagcatccaaagaacag
gactttggaacagcaaaccttcacttagaggtttctgacattgtcagcatccttgtttat
gtaggtgtggccaaaggcaatggagttctttcaaaaacaggtgtgttaaagagactggaa
gaggaagatctggatgacaacatgaagaaaaggttaaaagactcaagtgaaactccaggg
gccttatggcacatatacgtgagcaaagatgcagagaaaataaaagaattcctacaaaag
gttgcgaaagagcagggcctggaactgcccccggagcacgacccgatccgggagcagagc
tggttcctgagccagaagctgcgccggcgcctcctggaggagcagggcgtgcagggccgg
accgtagtgcagttcctgggggactcggtcatgatccccgcgggtgccctccaccaggtg
cagaacctacacagttgtgttcaagtgattaatgactttgtgtctccagaacatgtggtg
cactcgtttcatttaacacaggaactgagatcttctaaggaagaaattaactatgaagat
aagctacaggtaaaaaacatcttttatcattctgtgaaagatgctgttggaacattaaaa
aggtgctgtggtgaggagatggacagagcagaagaaaactcatga
DBGET
integrated database retrieval system
