Lepisosteus oculatus (spotted gar): 102689058
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Entry
102689058 CDS
T07349
Symbol
nrde2
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102689058 (nrde2)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102689058 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
CsoSCA_N
Motif
Other DBs
NCBI-GeneID:
102689058
NCBI-ProteinID:
XP_015205763
Ensembl:
ENSLOCG00000009037
UniProt:
W5MRL3
LinkDB
All DBs
Position
LG7:complement(2812532..2836382)
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AA seq
1154 aa
AA seq
DB search
MHAPVWKLETVFFPTMALFPAFSGLSSNKAPDSKSSSEGLDWLSNQSFRTEDALTLHRLV
VEEADESTRSPTDPRFSVENELSDGREDEDVSQSRKKKKKKKEKKKQKKRSSEGDAGLIF
PSDLLRSEQEADGKRQEKQLLPEGTFRWADEFQAPPELPFCVDKKADPANWEYKSLYRAD
IARYKRKGNCPLGLNPKTQGVTWDDSASEKKKGEKRQAQERYFSRAGRQLLSAEGAPVRP
RAEPPSPRGGFLPLPDCPEEGASAAAAPSWLNPLGIYDSSTALWLQGKGQPEGEAPPPGA
LCAAGPAARAEEYNRRLRENPADVQTWMEFVRFQDELMAGPSAFSMTESDSDKGKRSLRV
TVEKKVSILERAIESSPGSVELKLARLELCQELWEPSTLLKEWKKLIFLHPNNTELWRKY
LVFSQSQFSTFSVLKVNGVYGKCLSTLAAVHDGSMVSHPALPGTEEAILEMFLQQCQFLR
QAGHSEKALSLFQALLDFTFFKPDSVKDLPTRQQVEFFEPFWDSGEPRIGERGARGWKAW
MRQQERGGWIIPTEADDDDEDADDDDGEVKDRSLPKPQVWLEVEASREARHWLPWRPDRA
KGQSEEDCEDPDRQVLFDDIGPSMIRISKPELRFQLVCSFLHFLGIPAECSSSDPFWSIF
LDNLSVLEEGLEWERPLTSLYPEHAGISSVGHMTTLRSAKKPIGLCKQGEEFVQNVFQQL
LPLCSSEEKSLLTLYWIQYEKLKVLRCLQSNQKKRLKSQGKKSKRLAKSLLKVPENRNCL
GLWRQYAHLEWLLGNLEDARKVFDTAIAMGTGRGLQDAALCELCLLYAQLEVEAAEGAAA
GASSRAAYILTKLAEGGPYSEYEGQVSPVGVLKARKAYEHAFLDVSSRTADGPVQPGTLG
RAVSVAGCFALFQYLTMGIEAADKVYRQAGERVAEGLSTKTSARPSELETLALMQATLLR
YHMKVSVFPVRPLREALTAALRRSQGSARLWKLYVQLESRYHSASRARRFFHSVTRSTGS
VVPWLFAIHAEQQRKELVDSVQRVGGEEMHSTIPENGLSNRIRVLFEKAIASENGSHCPL
LWRMYLHFLVSQGNTERSRGIFYKALQNVPWAKGLYMDAVAYFPERVQEFLDLMTEKELR
LRVPMEELDILLED
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcatgcgcctgtttggaagttggagacagtctttttccccacaatggcactgtttcca
gctttttcgggattgtcgagtaataaagctccagacagtaaaagttcatcggaagggttg
gattggctaagcaatcaaagcttccggaccgaggatgcgttaaccctgcaccggctggtg
gttgaggaggctgacgagagcacacggagccccacagatcccaggttttctgtggaaaac
gagctttcagatggaagagaggatgaggatgtctcccagtccaggaaaaagaagaagaaa
aagaaggaaaagaaaaagcagaagaagaggagcagcgagggggatgccggcctcatcttt
cccagtgatctcttaaggagtgaacaggaggctgatgggaagagacaggagaagcagctt
cttcctgaaggcaccttcagatgggctgatgagttccaggctcctccggagctgccgttc
tgtgttgataagaaagcagacccagccaactgggagtacaagtccctctacagagcagac
atcgccaggtataaaaggaagggtaactgcccccttggcctgaacccaaagacgcagggt
gtaacgtgggacgattcggcttcggaaaagaagaagggtgagaaaaggcaggcgcaggag
cggtacttctccagggccggccgtcagctgctgagcgccgagggagctcctgtccgcccc
cgcgcggagccgccgtctcccaggggcggcttcctcccgctgcccgactgccccgaggag
ggcgccagcgcggcggccgccccctcctggctcaaccccctggggatctacgacagctcc
accgcgctgtggctgcagggcaaggggcagccagagggagaggcgccgccgcctggtgcc
ctctgcgctgcagggccggccgcgagggcggaggagtacaacaggagactgcgagagaac
cccgccgacgtgcagacctggatggagttcgtacgcttccaggatgagctgatggccgga
cccagcgccttcagcatgacggagagcgactctgacaaggggaagagatccctcagggtg
accgtggagaagaaggtctccatcctggagcgagccatcgagagcagcccgggcagcgtg
gagctcaagttagcccggctggagctctgccaggagctctgggagccctccaccctgctg
aaagagtggaaaaagctcatcttcctgcaccccaataacacagagctgtggaggaagtac
ctggtcttcagccagagccagttcagcaccttctcggtgttgaaggtgaacggtgtttat
ggaaagtgcttaagcactctggctgctgtgcacgatggcagcatggtgtcgcaccccgcg
ctgcctggtaccgaggaagctattctagagatgttcctgcagcagtgccagttcctgaga
caagcaggacactccgaaaaggctctgtccctcttccaggccctgctggacttcaccttc
ttcaagcccgacagtgtgaaggacttgcccaccaggcagcaggtggaattctttgagccc
ttctgggacagcggggagccccgaataggagagcggggtgccaggggctggaaggcatgg
atgcgtcagcaagaaaggggcggctggattatacccacagaagcagacgacgacgacgaa
gatgcggacgatgacgatggcgaagtgaaggacaggtctctgccgaaaccccaggtctgg
ctggaagtggaagcgtctcgggaggccaggcactggctgccctggaggccggacagggcc
aagggccagtcggaggaggactgtgaggaccctgacagacaggtcttgtttgatgacatc
ggcccttccatgatcaggatttccaagcctgagctgaggttccagctggtgtgttcgttt
cttcacttccttgggattcctgcggagtgcagctcctctgaccctttctggagcatattc
cttgataacctctcggtgctggaagagggactggaatgggagaggcccttaacatccctc
taccctgagcatgctgggatcagctctgtcgggcacatgaccactctgcgcagtgccaag
aagcccatcggcctctgcaagcaaggagaagagtttgtgcagaatgtgttccagcagtta
ttaccactgtgctcttcagaggaaaagtcccttctcacactttactggatacagtacgag
aagttaaaggtgctcaggtgtctgcagagcaaccagaagaagaggctgaagtcccagggg
aagaagagcaagcgactggccaagagtctgctgaaggtgccggagaaccggaactgcctg
ggcctgtggaggcagtacgcccacctggagtggctgctggggaacctggaggacgcccgc
aaggtcttcgacaccgccattgccatgggaaccggccgggggctgcaggacgccgcgctc
tgcgagctctgcttgctgtacgcccagctggaagtggaagcagcggagggcgcggccgcc
ggggcctcttcccgcgcagcctacatcctgaccaagctggccgaaggcgggccctactcg
gagtacgagggacaggtgtccccggtcggcgtcctcaaggcccgcaaagcctacgagcat
gcctttctggacgtctcgtcccgaaccgcagacggccctgtccagcccgggactctcggt
agagctgtgagcgtcgccggctgttttgctttgtttcagtacctgaccatggggatcgag
gccgcggacaaggtctacaggcaggcaggtgagcgagtggccgagggcctctctacgaag
acgtcggcccgcccctcggagctggagaccctggccctcatgcaggccacgctgctcagg
taccacatgaaggtcagcgtgttcccggtgcgccctctcagggaggctctcaccgcggcg
ctccggcgctcccagggcagcgcgcggctctggaagctgtacgtgcagctggagagccgg
taccacagcgccagccgggcccggaggttcttccacagcgtcaccaggagcaccggcagc
gtcgtgccctggctgttcgccatccacgcggagcagcagaggaaagagctcgtcgattct
gtgcagagggtggggggtgaagaaatgcactccaccataccggagaacggactgagcaac
cgaataagagttctgtttgaaaaagccatcgccagtgaaaatggctcccactgtcccctg
ctgtggagaatgtacttgcactttttggtgtcccagggaaacacagagaggagcagaggg
atcttttacaaagctctacagaacgtcccgtgggccaagggtctgtacatggacgcggtg
gcctatttcccggagcgcgtgcaggagttcctggacctgatgacagagaaggagctgagg
ctgcgcgtgccgatggaggagctggacatcctcctggaggactga
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