Lepisosteus oculatus (spotted gar): 102689230
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Entry
102689230 CDS
T07349
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03013
Nucleocytoplasmic transport
loc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102689230
03015 mRNA surveillance pathway
102689230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102689230
Enzymes [BR:
loc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102689230
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102689230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
102689230
NCBI-ProteinID:
XP_006641952
Ensembl:
ENSLOCG00000002118
UniProt:
W5M273
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All DBs
Position
LG25:4005317..4020856
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AA seq
486 aa
AA seq
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MATDSWALAVDEQEAAAESLGTLQIKEKDDKPKTEKPSVEANGTTKPEDNESDKPEDEDK
EDRAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFN
RPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPANKWPQCLCVSPTYE
LALQTGKVIEQMGQFYPEVKLAYAIRGNKLERGMKIQEQIVIGTPGTVLDWCVKLKFIDP
KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKDCQMLLFSATFEDSVWKFAQRIVPDPN
IIKLKREEETLDTIKQYYVLCNSKEEKFHALCNIYGAITIAQAMIFCHTRKTAGWLAGEL
SREGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVD
KDGNPDNETYLHRIGRTGRFGKRGLAINMIDSKFSMNILNRIQEHFNKKIEKLDTDDLDE
IEKIAN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgattcctgggccttggctgtagacgaacaagaagctgctgcagaatcgctg
ggtaccttgcaaatcaaagagaaggatgacaaacccaaaactgagaagcccagtgttgag
gcaaatggcactacaaagccagaagacaatgaatcagacaaaccagaagatgaggacaaa
gaggacagagctgcgcagtcactgctgaataaactgattcgcagtaatctggtgaacacc
accaaccaagtagaggttcttcagagagatcctaactccccgctgtattctgtcaaatcc
tttgaggagctgagactgaaaccacagttgcttcagggtgtgtacgctatgggtttcaac
agaccttccaaaatccaggagaatgctttacccatgatgcttgcagagccgcctcagaat
ttaattgcgcagtcacagtctggcacaggtaaaacagctgcctttgtgttggccatgctg
agtcatgtggaccctgcaaacaagtggccacagtgtttgtgcgtttctccaacatacgag
ctggctttacagacggggaaggtgattgagcagatggggcagttttatcctgaagtaaaa
cttgcttacgccatccgtggcaataaattggagaggggcatgaagatccaggagcagatc
gtgatcgggaccccggggacagtgctggactggtgcgtcaagctcaagttcatcgacccc
aagaagatcaaagtgttcgtgctggacgaggccgacgtcatgatcgcaacgcaaggccac
caagaccagagcattcgcattcagagaatgctaccgaaagattgccagatgctgctgttc
tctgccacctttgaggattctgtgtggaagttcgcacagaggattgtcccagaccccaac
atcatcaagctcaaacgcgaggaggagactctggacaccatcaagcagtactatgtcctc
tgcaacagcaaagaggagaagttccacgccctctgtaacatatatggagccataaccatt
gcccaggctatgatcttctgtcataccaggaagacagcgggctggctggcaggggagctg
tcccgggaagggcaccaggtcgccctgctgagtggggaaatgatggtggagcagagagcc
gcggtcatcgagcgcttccgggagggaaaggagaaggttctggtcaccaccaacgtgtgc
gccagagggattgatgtagagcaggtatccgtggtgatcaatttcgacctgcccgtggat
aaagacgggaatcctgacaacgagacgtacttgcacagaattggtcgcacggggcgtttc
gggaagaggggattggccatcaacatgatcgacagcaagttcagcatgaatatcctcaat
cgaatccaagagcacttcaacaaaaaaatagaaaaactggacacagatgaccttgatgaa
attgagaaaattgccaactga
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