KEGG   Lepisosteus oculatus (spotted gar): 102689526
Entry
102689526         CDS       T07349                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102689526 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:loc03021]
    102689526 (taf5)
   03036 Chromosome and associated proteins [BR:loc03036]
    102689526 (taf5)
Transcription machinery [BR:loc03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     102689526 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     102689526 (taf5)
Chromosome and associated proteins [BR:loc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     102689526 (taf5)
    STAGA complex
     102689526 (taf5)
    TFTC complex
     102689526 (taf5)
    SAGA complex
     102689526 (taf5)
    SLIK complex
     102689526 (taf5)
SSDB
Motif
Pfam: WD40_Prp19 WD40 TFIID_NTD2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_Nup120_160 WD_LRWD1 VPS8_N PEP5_VPS11_N WD40_like RAB3GAP2_N LisH Beta-prop_WDR11_2nd
Other DBs
NCBI-GeneID: 102689526
NCBI-ProteinID: XP_015203090
Ensembl: ENSLOCG00000011799
LinkDB
Position
LG5:31444949..31452847
AA seq 759 aa
MAAVQDGPIEPESEKEIKTEILNDAAGNLAAATAVGGVLSSPPVSAAVGTPKPTSTPTEG
KDQQTLLAVLQFLKKNKLVESAEILRREAGLLEESEDSQGPDAGGAGSGVGPSVEPDSGD
ATSLLSRVSCASTPSATPTPIPAKVTVAAGGGDNQPDVSVVLSAYSQQGDPALYQVYYSG
LKKFIESVLDCHRAELSQVFYPLFVHMYLELVYNNHENEAKSFFEKFHGDQECYYRDDLR
VLSGLTKKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYID
IFDGMPRSKSQIDSMSGSLAGEARREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKP
KKKKPKKDSMGSKSKKQDPNAPAQNRIPLPELKDSDKLDKIMNMKEATKRVRLGPDNLPS
ICFYTFLNAYQGLTAVDFTDDSSLIVGGFADSTVRVWSVTPKKLRGVKSAADLSLIDKES
DDVLERIMDEKTASESKILYGHSGPVYGTSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVG
YKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRMFAGHLADVTSTRFHPNSN
YVATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAFSPNGKFLASGATDGRVLLWDIGH
GLMIGELKGHTDTVYALKFSRDGEILASGSMDNTVRLWDSVKAFDDIETDDFTAATGHIH
LPENSQELLLGTYMTKSTPVVHLHFTRRNLLLAAGAYNP
NT seq 2280 nt   +upstreamnt  +downstreamnt
atggcggctgttcaagatgggccgattgagccggagtcggagaaagaaatcaaaactgag
atcttgaacgatgctgcgggaaatcttgctgcagctactgctgttggaggggtgttgtct
tcacctccggtttctgcggcagtgggaacccccaagccgacctctacacctacagaaggc
aaagatcagcagactctgttggctgtcctgcaattcctcaagaagaacaaattggtggag
tccgcggaaattttgcgccgggaggccgggctgttggaagaatccgaggattctcagggt
ccagatgccggaggagcaggatcgggagtagggccgagtgtagaacctgacagcggggat
gctacatctcttcttagccgagtttcctgtgcttctactcctagcgcaacaccaaccccg
attcctgcaaaagttacagtggcggctggtggaggggacaatcagcctgacgtgagcgtt
gttttgtcggcctacagccagcagggggacccggcgctttaccaggtttactacagcggg
ctgaagaaattcatcgagtccgtgctggactgtcacagagcggagctgtcccaggtcttc
taccctctgttcgtgcacatgtacctggaactggtctacaacaaccacgagaatgaggcc
aagtcgttctttgaaaagttccatggcgatcaggagtgttattaccgggacgacttgcgg
gtcctctccgggctgaccaagaaggagcacatgaaggggaacgagacgctgctggatttc
cgcaccagcaagtttgtcctgcgcatctcccgggactcctaccagctgctgaagaggcac
cttcaggagcgccagaacaaccagatctggaacatcatccaggagcacctgtacatcgac
atcttcgatggcatgccgcgcagcaagagccagatcgacagcatgtccgggagtctggct
ggagaggcccggagggaggcaaacaaagccaaggtgttctatggtctgctgaaggagcct
gaaattgaggtgcctttggatgatgaggatgaggaggcagagaatgaagaaggtaaaccc
aagaagaagaaacccaagaaggacagcatggggtcaaagagcaagaaacaggaccccaat
gctccagcacagaacagaattcctcttccggagctgaaggactctgataagctggataaa
atcatgaacatgaaggaggccaccaaacgggtccgcctgggcccagacaacctgccatca
atttgcttctacacctttctcaacgcataccagggtcttactgcagtagacttcactgat
gactccagtctgatcgtggggggctttgctgattccacagtgcgagtgtggagtgtcacg
ccgaagaaactacggggagtcaaatcagcagccgatctgagtctgattgataaagagtca
gatgatgtgctggagaggataatggatgagaagaccgccagtgagtccaagattttatat
ggccacagtggcccagtctatggcaccagcttcagccctgacaggaactatctgttgtca
tgttctgaagatggcactgtgagactgtggagtcttcagaccttcacctgtcttgtgggg
tacaaaggacacaattaccctgtatgggacacacagttctctccttatggctactacttt
gtatctggaggccatgaccgagttgctaggctttgggctacagatcactaccagccttta
aggatgttcgctgggcacctggctgatgtcacttccactcgtttccaccccaactccaat
tacgttgccactggatcagctgatcgaaccatcaggctttgggatgttctgaatggcaat
tgtgtccgtatcttcaccggtcacaagggtccaatacattcgctggctttctctccaaat
ggcaagtttctggcatctggagctacagatggaagagtgctgctatgggacattggccat
ggtctgatgattggcgaactgaaaggacacacagacactgtctatgcacttaagttcagc
agagatggagagattctagcatcaggctcaatggataatacagtgcggttgtgggattct
gtgaaagcttttgatgatatagagactgatgatttcactgcagctactggacacattcat
ctgcctgaaaattcccaggaattgctgcttgggacctatatgaccaaatcaacgcctgta
gtacacctccatttcacacgcagaaacttacttcttgctgcaggagcctataatccctag

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