Lepisosteus oculatus (spotted gar): 102689645
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Entry
102689645 CDS
T07349
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102689645 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102689645 (patl1)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102689645 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
102689645 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
102689645
NCBI-ProteinID:
XP_015194841
Ensembl:
ENSLOCG00000000717
UniProt:
W5LXE5
LinkDB
All DBs
Position
Unknown
AA seq
772 aa
AA seq
DB search
MFRFQSLDEDCPLEEEEGLVDEEDDIDQFNDDTFGAGAIDDDWQEEHARLAGLDERVRGD
GSGRVSSEAAPNTPLPAPSALAAAPAPPSLSAPGLGEEGSGDGSALAESLSRLIMETDPG
VAGVSGVIGGPGGPSAGPPSSLLGYQLHQRGTAPLQASPQVGSHSIWENSMGFGPVGVSP
ALVPHVEDSPLMSIIKEVGLPKRPPVRGEETRDLSERVPPPRSSSPVIGSPPVRAVPIGT
PPKQPFGHGLNQHILCPTAVHVRAPVHHRYPSTFPDRLSPNQLLNMANAPMRGHPFPSGV
GPVLSQIQRAQLISPQGALSHSAFSRSGGPSPLLAPKQLMAGGGGFRPFFGQPPSRSMAP
PPVRPDTTHLHPQHRRLLTQRLQNRSDHSRGDRAQRGGDRGRRERDRDPYSNLMTPREKD
WVARIQMMQLQSTDPYLDDYYYQNYFEKLEKRPGGEHCGRDSVRKEVTKLITPQVAKLEH
TYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEKLYS
LLLEVQDFEKKFLQTAEEQRESLLEQHKAQTLQLYSTLSDREGSRISDELFIQIMSLRKG
KRLIARILPFLGSEQAAAVVMAIARNLPAIAKKDKQDQVLSSLVEPCAAVIQSLSSAGLT
DLLQELQGPAQCPSDTQLHKVLHNKFGLTFLYLILSEGERLQSADPHCELMEDNRWTELV
FSVTRELLQTPPSSLATPFFTPPSLLSLFSRYVDRQKLDTLQDKLQISVQSR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgttccgatttcagtctctggatgaggactgccctctggaggaggaggagggtcttgtt
gatgaggaagatgacatagaccaattcaatgacgacacctttggagcaggagctatagat
gatgactggcaggaagaacacgcccggctggcggggctcgatgagcgggtgcgaggagac
gggagtgggagggtgagctctgaagctgcccccaacactccccttcctgccccctctgcc
ttggcagccgcccccgcccccccctctctctctgcccccgggctgggggaggagggcagt
ggcgatggctccgcgctggctgagagcctgtcccgcctcatcatggagaccgaccccggg
gtcgcgggggtgtccggagtcatcggggggccggggggaccctctgccggccccccctcg
tctctgctcggctaccagctgcaccagcgcggcacagcgcccctgcaggcctccccacag
gtgggctctcacagcatctgggagaacagcatgggcttcggacctgtgggcgtctctcct
gcactcgtccctcacgtggaggacagccccctcatgtcaatcatcaaggaggtgggactc
ccaaaaaggccaccagtgaggggagaggagacgcgggacttgtcagagcgtgtcccaccc
cctcggtcatcctcgcctgtgattggcagccccccagtgagagcggtaccgatcggcact
ccacccaaacagccctttggtcacggactcaaccagcacatcctgtgtccaacagcagtt
catgttcgagcccccgtccaccacagatacccctcaaccttccctgacagactgtccccc
aaccagctgctcaacatggctaatgctcctatgcgtggccatccttttccctctggtgtg
ggaccagtcctatctcagatacagagagcccagctcatttcaccacagggtgccctctcc
cacagtgctttctcaaggagtgggggcccctctcctctcctggctccaaagcagctcatg
gctggtgggggggggtttcgtccgtttttcgggcagcctccttcccgtagcatggcaccc
ccccctgtgcggcctgataccactcacctgcacccccagcatcgcagactgctgacccag
agactacagaaccgcagtgaccactctcggggagacagagctcagcgtgggggtgacagg
gggcgcagagaaagggacagagacccctacagcaacctgatgaccccacgggagaaggat
tgggtcgcacgtatacagatgatgcagctgcagagcactgacccctatttggatgactac
tactaccagaactacttcgagaagctggagaagcgcccggggggagagcattgtgggcgg
gacagtgtccggaaagaggtgaccaagctgatcaccccccaggtggccaagctggagcac
acctacaggccagtgcagtttgcaggctctctcgggaagctcacagtctccagtgttaat
aaccctcgcaagatgattgacgctgtggtcacgagtcgctccgatgatgaggagaagaga
gagaagcaggtgtggaacaagaggcgacagattctctacacagtggagaagctgtacagt
ctgttgctggaggtgcaggactttgagaagaagttccttcagactgcggaagagcagagg
gagagcctgctagagcagcacaaagcccagaccctccagctgtacagcacactgagcgac
agggagggcagcaggatcagcgatgagctcttcatccagatcatgtccctccgcaaaggc
aagcgtctcattgcccggattctccccttcctgggtagcgagcaggctgctgccgtcgtc
atggctatcgcccgcaatttgccagccatcgcgaagaaggacaagcaggaccaggtgctg
tcctcgctggtggagccctgcgcggcggtgatccagtccctgtccagcgccggcctgacg
gacctcctgcaggaactgcagggcccggcccagtgccccagcgacacgcagctgcacaag
gttctgcacaacaagtttggcctgacgttcctgtacctcattctcagcgagggggagagg
ctgcagagcgcagaccctcactgtgagcttatggaggacaatcgatggactgagctggtg
ttctcagtgacccgggagctgctgcagaccccgccctcctcgctggccacgcccttcttc
accccccccagcctgctgtcactcttctcgcgctacgtggacaggcagaaactggacacc
ctacaggacaagctacagatctctgtccagtccaggtag
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integrated database retrieval system
