Lepisosteus oculatus (spotted gar): 102690261
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Entry
102690261 CDS
T07349
Symbol
col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04510
Focal adhesion
loc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102690261 (col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102690261 (col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
102690261 (col2a1)
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102690261 (col2a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102690261
NCBI-ProteinID:
XP_006629301
Ensembl:
ENSLOCG00000005115
LinkDB
All DBs
Position
LG4:13213275..13269966
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AA seq
1492 aa
AA seq
DB search
MFSFLDSRTVLLIAATQVILLAVVKCQDEEDVQEAGSCVQDGQRYSDKDVWKPEPCRICV
CDTGTILCDEIICEELKDCPNPEIPFGECCPICPAGQSSPGGRQPGAKGQKGEPGDITDV
VGPRGPMGPMGPPGEQGSRGERGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGL
GGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEPGEPGP
SGPMGPRGPPGPSGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGIKGHRGYPGL
DGGKGEAGAAGAKGEAGAPGENGAPGPMGPRGLPGERGRPGSAGVAGARGNDGLPGPAGP
PGPVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGI
PGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEQGPKGEHGP
AGPQGAPGPAGEEGKRGARGEPGAGGPPGPPGERGSPGNRGFPGQDGLAGPKGAPGERGP
SGISGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGA
RGQPGVMGFPGPKGATGESGKPGEKGLVGAPGLRGLPGKDGETGAQGPPGPAGLAGERGE
QGQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGAAGPRGERGFPGERGGPGAQGL
QGPRGLPGTPGTDGPKGATGPAGALGAQGPPGLQGMPGERGTAGIPGPKGDRGDVGEKGP
EGAPGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGF
AGPPGADGQPGAKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGA
TGFPGAAGRVGPPGPNGNPGPAGPPGASGKDGPKGVRGDAGPPGRQGDAGLQGPAGPPGE
KGEAGEDGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGD
RGPPGPVGPPGLTGPSGEPGREGNPGSDGPPGRDGATGVKGDRGSTGPAGAPGAPGAPGA
PGPVGPTGKQGDRGEAGAQGPSGPPGPAGARGMPGPQGPRGDKGEAGEAGERGQKGHRGF
TGLQGLPGPPGPAGDQGATGPAGPSGSRGPPGPVGPHGKDGSNGLPGPIGPPGPRGRSGE
TGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGAPEKAPDPLRYMRADQASSSLRQHDAEV
DATLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFC
NMETGETCVYPNPSSIPRKHWWSSKSKDRKHVWFGATMNGGFHFSYGDDSLAPNTASIQM
TFLRLLSTEASQNITYHCKNSIAYMDHSSGNLKKAILLQGSNDVEIRAEGNSRFTYSVLE
DGCTKHTGRWGQAVIEYKSQKTSRLPIVDVAPFDIGGADQEFGVDIGPVCFL
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttttggattcaaggactgttctgctaatcgcagcaactcaagtcattcta
ttagcggttgtcaaatgccaggacgaagaggatgtccaggaagcaggcagctgcgtgcag
gacggccagcgctatagcgacaaggatgtgtggaagccggagccgtgtcggatttgcgtg
tgcgacactgggactatcctgtgcgatgagattatctgcgaggagctaaaagactgccct
aaccccgagatcccattcggagagtgttgccccatctgccccgctggccagtcttcgcct
ggtggtcgtcaacctggcgctaagggacagaaaggtgaaccaggagatatcacagatgtt
gtaggaccacgaggaccgatgggccccatgggcccacccggagagcaggggtcgcgtgga
gagcgaggggataagggcgagaaaggcagccctggtccccgtggcagagatggggagcct
ggcactcctggcaaccccggtcctcccggacccccaggacccaacggcccgcccggcctt
ggcggaaactttgctgctcagatggcaggaggatttgacgagaaagcaggtggtgcacag
atgggcgtgatgcaaggaccaatgggccccatgggtccccgaggaccacctggccccact
ggatctcctggcccacaaggtttccaggggaaccccggagagcccggcgaacccggcccc
tctggcccaatgggaccccgcggcccccccggaccttctggcaaacctggagatgacggt
gaggctggaaagcctggcaaagctggtgagcgcggacctcctgggccccagggtgctcgt
ggattcccaggaactcctggtctgcctggaatcaaaggtcataggggttacccaggtctt
gacgggggaaagggtgaggctggagctgcaggagcaaagggagaagctggtgcccctggt
gagaatggcgctcccggacccatgggaccccgcggcctgcctggcgagagaggacgtccc
ggatctgctggagttgctggcgctcgtggtaatgatggcttgcctggtcctgctggtcct
cctggacccgtgggcccagctggtgctccaggctttccaggctctccaggtgctaagggc
gaagcaggtcccacaggtgctagaggccccgagggagctcagggaccccgaggagagtca
ggaaccccaggatctcccggtccctctggcgcttctggtaacccaggtactgatggtatc
cctggagccaaagggtcagctggcgctcctggcattgcgggtgctcctggctttcctgga
cctcgcggacccccaggaccccagggagccacaggacctcttggacctaaaggtcaacag
ggtgaccccggtatcccaggattcaaaggcgaacaaggtcccaaaggcgagcatggtcct
gccggccctcaaggtgcccccggtcctgctggagaggaaggcaagagaggagcccgcgga
gagcccggtgctggaggaccccctgggccccctggagagaggggctcccccggtaaccgt
ggtttcccaggtcaggatggtcttgcaggccccaagggagcccctggcgagcgtgggccc
tctggaatttctggtcccaaaggcgccaacggagaccccggtcgccctggagagcctggc
ctgcctggtgccagaggtcttactggtcgccctggtgatgctggtcctcaaggaaaagtt
ggcccctctggagcccctggtgaggacggtaggccgggaccccctgggcctcagggagcc
cgcggccagcccggcgtgatgggattccctggaccgaaaggagctaccggtgagtctgga
aaacctggagagaagggattggttggcgctccaggtctcagaggtctgcctgggaaagat
ggggagactggtgcacagggacccccagggcctgctggtcttgctggagagagaggagag
caaggtcagcccggtccttctggtttccagggtcttcctgggcctcctggtcctccaggt
gagggtggaaagcccggtgaccagggtgttcccggagaggcaggagctgcaggagctgct
ggacccagaggcgagcgcggtttcccaggagagaggggtggacctggagcccagggtctg
cagggcccacgaggtctgcccggaaccccaggaactgatggacccaagggtgccaccggc
ccagctggtgctcttggcgcccagggaccccccggcctgcagggaatgcctggagagaga
ggtactgctggcattcctggacccaagggagacagaggcgatgttggtgagaaagggcct
gagggagctccaggcaaggatggctctagaggtttgactggtcccattggtcctcctggt
cctgctggtcctaatggcgagaagggtgaatctggtccttctggtccatctggtgctgct
ggtgcccgtggagctcctggtgaccgtggtgaaactggtcctcctggacctgctggattt
gctggtcctcctggcgcagatggccagcctggtgccaagggagagcagggcgagtctggg
cagaagggtgacgctggcgcccctggacctcagggaccctcaggtgctccgggaccacag
ggtccaactggtgtttctggaccaaaaggagctcgcggtgcccagggccctcctggtgcc
actggtttccccggtgccgcaggcagagttggacctcctggccccaacggtaacccaggc
cccgctggtccccccggcgcctctgggaaagacggccccaagggcgtgcgtggcgacgcc
ggtcctcctggtcgccagggagacgctggtctgcagggtcctgccggtcctcccggagag
aagggcgaggctggagaggatggtccccctggtcctgatggtccttctggtcctcaaggt
ctggccgggcagcgtggtattgttggtctgcctggccagcgtggtgagagaggcttccct
gggcttcctggaccctctggcgagcctggcaagcaaggcgctccaggaggttctggtgac
cgtggcccccctggccctgtgggaccccctggcctgactggaccctctggagaacctggc
agagagggcaatcccggatctgatgggcctcctggcagagatggtgccactggtgttaag
ggtgatcgtggtagcacaggcccagctggagctcctggcgctcctggtgcccctggtgct
cctggaccggttgggccaactggcaagcagggagacagaggagaggctggcgcccaagga
ccctccgggccccccggacctgctggtgccagaggaatgcctggaccccaagggccacgc
ggggacaagggcgaggcaggcgaagctggtgagagaggtcagaagggtcatcgcggcttc
accggactgcagggtctgcccggacctcccggtcccgctggagatcagggagccactggt
cctgctggtccatccggaagtcgaggaccccctggccccgttggtccccatggaaaggat
ggttccaacggcctgcctggacccattggacctccaggacctcgtggacgatctggcgag
actggtcctgctggtcctcctggtaaccctggtcctcccggtcctcccggcccccctggt
ccagggattgacatgtcggccttcgccggcctgggcgcgcccgagaaggccccggatccc
ctgcgctacatgagggccgaccaggcctcctcctccctgaggcagcacgatgccgaggtc
gacgccaccctcaagtccctcaacaaccagatcgagagcatccgcagccccgagggctcc
aagaagaaccccgcccgcacctgcagggacctcaaactgtgccaccctgactggaagagc
ggagactactggatcgatcccaaccagggctgcaccatcgacgccatcaaggtcttctgc
aacatggagactggagagacctgcgtctaccccaacccgtccagcatcccgcgcaagcac
tggtggtccagcaagagcaaagaccgcaagcacgtctggttcggagccaccatgaacgga
ggattccacttcagctatggtgacgacagcctggcgcccaacacggccagcatccagatg
accttcctgaggctgctgtccaccgaggcctcccagaacatcacctaccactgcaagaac
agcatcgcctacatggaccacagcagcggcaacctgaagaaggccatcctgctgcagggc
tccaacgacgtggagatcagagccgagggcaacagccgcttcacgtacagtgtgctggag
gacggctgcacgaagcacaccggacgatggggccaagccgtaatcgagtacaaatcacag
aagacgtctcggctgcccattgtggacgttgcgccctttgatataggaggagcagaccaa
gaatttggagttgacatcggtccagtctgcttcttgtaa
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