Lepisosteus oculatus (spotted gar): 102690347
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Entry
102690347 CDS
T07349
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102690347 (tnrc6a)
03036 Chromosome and associated proteins [BR:
loc03036
]
102690347 (tnrc6a)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102690347 (tnrc6a)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102690347 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
Ago_hook
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102690347
NCBI-ProteinID:
XP_015215652
Ensembl:
ENSLOCG00000005517
UniProt:
W5ME56
LinkDB
All DBs
Position
LG13:10518002..10642357
Genome browser
AA seq
2137 aa
AA seq
DB search
MSGSSLPACAECAGLQKAAATRFALAFLCAACQVMERNSNHVQDNVIECTDSAGEQIREG
FISCHCLEKDHFPAGPGKSHQELEAVATKEAEEKQNRDIVQEKEGQLMEERKKRKDDKKK
KDAGLKKAIEQKNKVPEHIKSSLSQPQPANPNSGTSTVTSTVSNAKRAPASSQPQAPPRY
PPREVPPRFRQHEQKQLLRRGQPLPVLAATLGTRAQPSSGQPGGAPPASEGSLQNGTKAH
HPGMPPIRDLVSHSPNQTDLNRSGLGSHYENSHWGSGSTGSDSNTNWDKVIVDGCDKEAW
PSITGSDPELASECMDTDSASSSGSEKNLSIMASGNTGGDGDGSRHSSGHGSHFMVANGS
NNVGNGSIKGPWGSSSGSMLSTCQGPGENPNSKLTESSHGKLNAWGTLGSSTNGGNPSTL
NPNANHGAWPVLENSGHNQHGSVGNGNGNTSIQRSTIGQTPGSQSINSKGGVSTHASWGS
LQDNTPESEVNGTSKVSLSGQPQNLNTEMNGPNNTTNLMTSSLPNSTGSMQMNELPTGHR
AWRVGTGSSTQLQASSVSNGTSISQQGNSEGMNGTAWGAPPGTNYSGDKCPVPKGQAVGD
TVNATLMQSGINGSAAGAASFKNNNNGVGGRGGGWDSGAAWGAGNGVGPVGIPRPWGSAS
SSSSSSSSSSSSNTGTKVSKGEWNSLPNNNQHSNDGGNGSRKGTNGWKSLEDDALGVGGS
NGQAPQSSEQGGMWAKSGGSEGSGESTGSRSDRMSGDAPRGRDRRKANPQGPVQNVISRS
DLDPRVLSNTGWGQTPIRQNTAWDIEATSCNDKKTDNGTEAWGGSVSQASDSGGWGDGPS
ANSNDTSSVSGWADPKPAPGWGDTKGSSGQGGWEDNSAATGVGKSNQSWGGSKEDKSSTW
SDAQKVKQGWMEGQKSNQGWGTPSGAGWGGDVPRGNHWGDPPKSGSGGWDSDSDRSGSGW
SETGRAGGGNTWRGSGGGNSPNTAGPSGWGDPNKANNQGQGWGEPPKPSHPAQGWGDTGK
PRNSPDWNKPQDATAGPPSSWGTGTSQPGPSTNNKPSGWLGGPIPAPPKEEESTGWEEPS
PESIRRKMEIDDGTSAWGDPSKYKYNNVNMWNKNSIADQETQASSQQHPPQPLPPPSAIP
SKEKGWGEPYRAPPKAESSWGEPTGPPVAVDNGTSAWGKPMDTGTSWEEAGVESAGTGSW
SGPAVGQQPPHKPGPKPMQDGWCGEEMPMPSMRHSSWEDEEDVEIGMWNNTPSQEMNQSG
NWPSCMKKLPPKGNIKGGNKQDDVWINQFVKQFNNIGFSRESSDEPLKSNKMELPGGMLP
DKRMDMDKHGLNIGEYNGVIGKSPGSRHQISKESSMERSPYFDKLSLSLSGQDGIVAEEP
QNVQFSSNQNMKLPPSNNALPNQSPGSVSGLSLQNLNSVRQNVNPGFSGSNAAAQARSTQ
QPPAQPLNSSQPNLRAQVPPPLLSPQVPASLLKYPPNNGGLNPLFGPQQVAMLNQLSQLT
QLSHISQLQRLLLQQKVQNQRSMPIGGRQQQDQQGRPLGTAHQMMPPPRHLDPSLMKQQQ
QQQQQPSPQPSSLHQPGLKSYLENFMPHNASDLQKEQNTLNSFSNFPIGGFPSHPNLGQA
DSLLHQAVKHPLSGSDGSGCYPAGSSHSHSLFSPPLSNGHAGPGSPIYHRAGRTFASNEN
HTLSTRGLNSNLNVSNLDIGSISFKEPQSRLKKWTALDISVNPSLDQNSSKPGAIPSGLR
LEDSPFGPYDFMNTSNSPVSPPGSVGDGWPNRAKSPHGSSNVNWPPEFRPGEPWKGYPNI
DPETDPYVTPGSVINNLSINTVRDVDHLRDRNNGSTSSLNTTLPSTSAWSSIRASNYSGS
LSSTAQSTSARNSDSKSTWSPGPVTNTSLAHELWKVPLPPKGITAPSRPPPGLTGQKPPS
SWDNSSLRLGGGWGSSDSRYTPGSSWGDNSSGRTTNWLVLKNLTPQIDGSTLRTLCMQHG
PLITFHLNLPHGNAVVCYSSKEEAAKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQS
MTASPGWQALGVSQNRIGSIESSHPFSNRNDPNHWNGAGLSGAGSGDLHGTSLWGASNYS
TSLWGNPSGSEGRGIGSPSPINSFLPVDHLTGAGDSI
NT seq
6414 nt
NT seq
+upstream
nt +downstream
nt
atgtctggttcctctctccctgcgtgtgctgagtgtgctggtctgcaaaaggctgctgcc
acgcgctttgctctggcattcctctgtgctgcgtgccaggttatggaaaggaactccaac
catgttcaagacaatgtgattgagtgcacggactctgcaggtgaacagataagggaaggc
ttcatctcctgtcactgcttggagaaggaccatttccctgccggcccaggaaaatcccat
caagaattggaagctgtagccaccaaagaagctgaagagaagcaaaacagggatatagtg
caagaaaaggaaggacagttgatggaagaaaggaaaaagagaaaagacgacaagaaaaag
aaggacgctggtttaaagaaggccattgaacaaaaaaacaaagtgccagaacatatcaag
tccagtttaagccagcctcagcctgccaacccgaacagcggcacttccaccgtaaccagc
accgtcagcaatgccaagcgggccccagccagcagccagccgcaagccccgcctcgatac
ccgccccgcgaagttccgccccgtttccgccagcacgagcagaagcagctgctgaggcgg
ggtcagcctctccctgtccttgctgccaccctgggaaccagagcgcagccctcctccggc
cagccagggggcgctccgccagccagtgaggggtcgctgcagaacggcaccaaggcccac
cacccaggcatgcctcccatacgggatttggtcagccactcccctaaccagacagatttg
aatcgcagtggtctgggatctcattatgaaaattcccactggggttccggctcaactggc
agcgattcgaacaccaactgggacaaagtcatcgtagacggctgcgacaaggaagcctgg
ccttctatcactggtagcgacccagagttagcctcagaatgtatggacactgactctgcc
tcaagctctgggtctgagaaaaaccttagtataatggcttctgggaacactggtggtgac
ggcgatggcagtaggcacagcagtggacatggttctcattttatggttgcaaatggcagc
aataacgtgggcaatgggagtattaaagggccatggggctcatcctctggctcaatgcta
agcacatgtcaaggccccggggagaatcccaacagcaagctaacagaaagtagccatggt
aaattaaacgcatggggtaccctaggttcctcaaccaatggaggtaatccaagcactttg
aacccaaatgccaaccatggtgcctggcctgttttggaaaacagtgggcataatcagcac
gggtctgtgggcaacggaaatggcaacaccagtatccaacgtagcaccataggtcagacg
cctggcagtcagagtattaactctaaggggggtgtctccacccatgcatcctggggcagc
ctccaggacaacacccccgagtctgaagtcaatggtacaagtaaggtttcgttaagcggg
caacctcaaaaccttaacactgaaatgaatggaccaaataacactactaacttgatgacc
tctagtttaccaaactctactggttcaatgcagatgaacgaactgcctacagggcaccga
gcctggcgtgtgggcacagggagctccactcagctccaggcctcttcagtttctaatggc
acttccatttctcagcaaggcaacagcgagggaatgaatggtacggcatggggagctcca
ccaggcactaactattctggagacaaatgcccagttcctaaaggccaagctgtgggtgac
actgtgaatgcaactctaatgcagtctgggattaacggatcagctgcaggcgctgcttct
tttaagaataataataacggggtggggggtcgtggaggggggtgggattcaggggcggct
tggggagcagggaatggtgttggccctgtggggatccctcgcccctgggggagcgcctcc
tcgtcgtcctcatcttcctcctcctcctcctcttcaaacactggcactaaggtctccaag
ggagagtggaacagcctgcccaacaacaatcagcattccaacgacggcggaaatgggagc
aggaagggaacaaacggctggaagtctctggaggacgatgctctaggggtcgggggcagc
aacgggcaggcaccccaatcgagcgagcagggcggcatgtgggccaagtcgggtggcagc
gaaggcagcggtgaaagcacgggcagccgcagcgacagaatgagcggagatgcgccccgt
ggtcgagaccgccgaaaggcaaacccccaggggccggtacagaacgtgatctccaggtcc
gacctggacccccgtgtcctgtccaacacgggctggggccagaccccaatccgacagaac
accgcctgggacatcgaggccacctcgtgcaacgacaaaaagactgacaacgggacggag
gcgtggggtggctccgtctcccaggcatctgactcagggggatggggggacgggcccagc
gccaacagcaacgatacctcatcagtatctgggtgggccgatccaaagcctgcccctggg
tggggagacaccaaaggctctagtggccaaggggggtgggaggacaattctgctgctacg
ggagtgggcaagagcaatcagtcttggggaggtagcaaagaagacaagtcttctacgtgg
agtgatgcacaaaaggtcaaacagggatggatggaaggacagaaatctaaccagggttgg
gggactccttctggagcggggtggggaggagatgttccacgggggaaccactggggcgac
cctcccaagtcaggttcaggcggctgggacagtgacagcgaccgctcgggatctggctgg
agcgagacgggccgcgccggcggtggcaacacctggaggggcagcggagggggcaactct
cccaataccgcaggaccatctggctggggagatcctaataaggctaacaatcagggccag
ggatggggggaacctcccaaacccagccatcctgcccagggctggggcgataccggcaag
ccccgcaactcccccgactggaacaagccgcaggatgcgacagcagggccaccctcttcc
tggggcactggtacctcacagccagggccctctaccaacaacaagccatcgggttggctt
ggggggcccatcccggcccccccaaaagaggaggagtcaacgggttgggaggagccctcc
ccagagtcgatcaggcgcaagatggagattgatgatggcacctcagcctggggggacccc
agcaagtacaagtacaacaatgtgaacatgtggaacaagaacagcattgctgaccaggaa
acacaagcctcatcacagcaacatcccccacagcctctaccgccaccaagtgccataccc
agcaaggaaaagggctggggcgagccatacagagcaccgcccaaagcagagtcttcatgg
ggggagcctaccggtccccccgtggctgtggacaacggcacgtcggcctggggcaagccc
atggacacggggacgagctgggaggaagctggtgtggagagcgcgggcacaggcagctgg
agcggccccgcagtgggacagcagccaccacataaacctggacccaaacctatgcaagat
ggctggtgtggcgaagagatgcccatgccaagtatgcgccactcgagctgggaagacgag
gaggatgtcgagattgggatgtggaataacactccttcccaagagatgaaccagtctggg
aactggccttcgtgcatgaagaagttgcctccaaagggcaatattaaaggaggcaacaag
caggacgatgtatggatcaatcaatttgtgaagcaatttaacaatattggtttctctagg
gaatcttcagacgaacccttgaagagcaataagatggaattgcctggaggaatgttacct
gacaagcgcatggatatggataagcacggtctgaatattggagagtataatggtgtgatt
ggaaagagccctggctcacgccatcagatttccaaagagtcttccatggagcgcagtccc
tactttgataagctatctctatccctgtctggtcaagatggcattgtagcagaagagcca
caaaatgtacagttttcatctaatcaaaatatgaagcttcccccttcaaacaatgcacta
cctaatcagagtcctggctctgtgtcggggctgagcctccaaaacttgaattcggtcaga
cagaatgtcaatcccgggttcagtggcagtaatgcagcagcacaagccaggagcacacaa
cagcctccagcacaacctctgaactcatctcagcctaatctccgcgcacaagtgcctcct
ccattgctttcccctcaggttccagcatcattgttgaaatatcctccaaacaatggaggt
ctgaaccctctgttcgggccacagcaggtagctatgctgaaccagctttcccagctcacc
cagctctcccacatctctcagctgcagcgcctcctccttcagcagaaggtacagaaccag
agaagcatgcctattggtggccgtcagcagcaggaccagcagggtcgccctctaggcact
gctcaccagatgatgccgcccccgcgccacctggacccctccctgatgaagcagcagcag
cagcagcagcagcagccttccccccagccgtcatctctgcaccagcctggcctcaaatcc
tacctggagaacttcatgccccacaatgcatctgacttgcagaaagagcagaacacactc
aattcattcagtaatttccctataggtgggtttccttcccatcctaacttagggcaggct
gactctctgttgcaccaagctgtgaagcaccctctgtctggttcagacggttcaggctgt
tacccagctggcagtagccacagtcatagcctttttagccctccactgagcaatggccat
gctgggccaggctcgcccatctaccaccgggcagggaggacctttgccagcaacgaaaac
cacactttatcaacaagaggcttgaactcaaacttgaatgtaagcaacctggatattggc
agtattagttttaaagagccacagtcccggctgaagaaatggactgccttggacatttcc
gttaacccatctctagatcaaaactccagcaaacctggtgctattccttctgggctgagg
cttgaagattccccctttggtccatatgacttcatgaacaccagtaactctcctgtcagc
cctcctggttctgtgggagacggctggcccaaccgtgccaaatcgcctcatggctccagc
aatgtcaactggccaccagaatttcgccctggtgagccttggaaaggatatccaaacatt
gaccctgaaactgacccttacgtcacgcctggcagtgtgattaataatctctccattaat
actgtccgggacgttgaccacctcagggacaggaacaatgggtcaacctcatctctaaac
accacgctgccttcaactagtgcctggtcatccattcgtgcctccaactacagtggttcc
ctcagcagtacagcacaaagcacttcagccagaaacagtgactccaaatccacatggtct
cctggtccagtcactaacacctctctggctcatgagctgtggaaggttcctctgccaccg
aaaggcatcaccgctccgtcccgtccaccccccggcctgaccggccagaagcccccatcg
tcgtgggacaacagctcactgcgcctagggggaggctggggaagctccgactccagatac
acccccggttcgagttggggcgacaacagctcagggagaacaactaattggcttgttctc
aaaaatctcacacctcagattgatggctccactctgcgaactttgtgcatgcagcacggt
ccactgataacattccacctgaacctgccccacggcaatgctgtagtctgctacagttca
aaggaggaggcagccaaggcacaaaaatctctgcacatgtgcgttttagggaacactact
attcttgctgagtttgctagtgaagaggaaattagccgtttctttgcacaaggccagtcc
atgactgcctcgcccggctggcaggctctgggtgtctctcagaaccggatcggatccatt
gagagttcccaccctttctccaaccgcaatgatccaaatcactggaacggtgctgggctg
tcaggagctggcagtggagaccttcacggcacttccctctggggtgcttctaactattcc
actagcctatgggggaaccccagtggcagtgagggccggggaatcggcagcccatccccc
atcaactccttccttcctgtcgaccacttgacaggagctggagactccatctga
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