Lepisosteus oculatus (spotted gar): 102690353 Help Entry 102690353         CDS       T07349                                  Symbol col9a1 Name (RefSeq) collagen alpha-1(IX) chain   KO K08131   collagen type IX alpha Organism loc  Lepisosteus oculatus (spotted gar) Pathway loc04510   Focal adhesion loc04512   ECM-receptor interaction loc04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:loc00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     102690353 (col9a1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     102690353 (col9a1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     102690353 (col9a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00535 Proteoglycans [BR:loc00535]     102690353 (col9a1) Proteoglycans [BR:loc00535]  Extracellular matrix (ECM) proteoglycans   Others    102690353 (col9a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen Laminin_G_2 Laminin_G_3 Motif Other DBs NCBI-GeneID:  102690353 NCBI-ProteinID:  XP_015218622 Ensembl:  ENSLOCG00000017076 LinkDB All DBs Position LG16:complement(20879882..20920544) Genome browser AA seq 928 aa AA seqDB search MGELIREKLVFIFLLGCLIQKCFATVQHSQRFPLSAGAIQSQLRTCPQIKVGEDDLPGFD VISQFHLGTATTGGTIQRVVGSTPSQVAYIVGPEYSFRLQTRAAYPFGLPEEFSFLATFR MSGSTLHKNWNIWQIQDAFGNEQLAVRMNGKTRSVEFSCARADHSLQTAVFSFIPSLFDS QWHKILLSVETGSVTLFVDCDLIDSQKISPRGGVNLDGFSSIGKLKDNAAVAVPFELQWM LIHCDPQRPQRETCDELPARRSIAQAEVERGLPGPRGPPGPPGPAGVPGIDGIDGDRGPD GPTGPPGPDGDPGKSGSPGLPGEPGADGLTGPDGDAGPPGTSGQKGEPGKAGLRGAAGSG PDGPPGPPGPGGLPGELGRAGPIGDIGVRGPPGPPGPPGPRGAPGFRESTGELCPNACPP GPSGHPGLPGMKGHKGVKGESGEPGKQGHKGEEGDQGAPGEIGAQGPPGPQGTRGITGMM GPKGERGPRGHDGEPGPQGVQGAAGDQGQRGVMGEVGPKGDQGPQGPRGITGLPGPKGES GLPGVDGREGIPGLPGTKGNPGKPGAPGEAGLQGLLGLPGAPGPKGVSGEKGNAGDPGLI GTMGSSGKTGERGEQGEVGPVGPRGGPGDRGEQGPPGPPGKPGPRGPKGDLGLPGLPGPA GLPGVKGDRGAVGQTGPKGEQGDPGAEGTPGEKGDQGDQGEPGPKGSTGSPGEPGNRGPE GSRGQPGVEGPPGSPGPRGMQGDRGVPGLPGSQGPAGKEPSDQHIRQVCMRVMQEQLAQL AASLRRPESGAAGLPGRPGPPGPPGSPGDSGFPGQAGARGLPGLKGPPGLIGLKGPKGEM GDKGERGVTVRGPKGLPGPPGLPGEPGRPGYGRDGRDGERGPPGLPGQPGIPGPPGPAGP NGYCDPSACNLQAIAAPQSLKDSNMKGP NT seq 2787 nt NT seq  +upstreamnt  +downstreamnt atgggggagctgataagggaaaaacttgtgttcatcttccttcttggttgcttgattcaa aaatgctttgccaccgtgcaacactcccagagatttcctctttctgcgggtgcaattcaa agccagctaagaacttgtcctcagataaaagtcggagaggacgatttaccaggttttgat gttatttcccagtttcatttaggcaccgcaacgactggaggaacaatccagcgggtggtc ggatcaaccccttcgcaggttgcgtacatagtgggacccgaatatagcttcaggttacaa acaagggccgcctacccttttgggctgccggaagaattttcttttcttgccactttccgg atgagtgggagcaccttacataagaactggaatatttggcagatccaagatgccttcgga aacgagcaacttgcagtaagaatgaacgggaagacgcgctcggtggagttctcctgcgca agagccgatcacagcctgcagaccgccgttttctctttcataccgtccctgttcgactct cagtggcacaagatcttgctaagtgtggaaacgggatcagtgaccctttttgttgactgc gatttgattgactctcaaaagatatccccgagaggcggggtgaacctcgatggcttttct tcgattggaaaattaaaggataacgctgcggtggcagttccgtttgaacttcagtggatg ctgattcactgcgatccacaacggcctcagagggagacgtgcgatgagcttccagccaga agatcgattgctcaggcggaggttgagcggggccttcccggcccgaggggtccgcccggc ccgccgggtcctgccggggtccctgggatcgatggcatagatggagacagaggtcccgat ggcccaactggtcctccgggtcctgatggggatccaggtaaaagcggctcgccgggattg ccaggagagcccggggctgatggattaactgggcctgatggagatgcaggtccacctggt acatcaggtcagaaaggtgaaccgggaaaggctggtctccgtggagcagcaggttcaggc cctgatggaccacctggcccacctggtccaggaggacttccaggggaactaggacgcgct ggacccattggagacattggagtcagaggccccccaggaccccctggccccccaggacca cgaggtgctcctggatttcgtgagagcactggagagctatgtcccaatgcctgccctcct gggccatctggccatcctggtcttccaggtatgaagggccacaaaggtgtaaaaggagaa tctggtgaaccaggaaagcaggggcacaagggagaagagggggatcaaggagccccaggg gagatcggagctcaaggcccaccaggtccccagggtactagaggaatcaccggcatgatg gggccgaagggcgagaggggacctcggggacatgatggggagccagggcctcaaggagtt cagggagccgcaggtgatcaaggacagagaggtgtgatgggtgaggttgggccaaaagga gaccagggccctcaaggtccaagaggaattacaggtctacctggtcccaaaggagaatct ggattaccaggagtggatggtcgtgaagggattcctggactgccagggacaaagggcaat cctggaaaaccaggagctccaggagaagctggcctgcagggtcttctcggcttgcctggt gcacctggaccaaaaggtgttagtggtgagaagggcaatgctggtgacccaggcttaatc ggcactatgggatcttctggcaaaacgggggaacgaggagagcaaggtgaagtcggccct gttggaccaagaggtgggccaggtgatagaggagaacagggcccccctggtcctccagga aaaccaggcccccgtggtcctaaaggtgaccttggtttgccagggctgcccggtccagct ggcctacctggagttaaaggagacaggggtgctgtgggtcaaactggtcctaaaggagaa caaggagatccaggtgcagagggcacaccaggagagaagggagaccaaggtgaccaagga gaacctggaccgaaaggatcaactggcagtcctggggaaccgggcaatcgcggacccgaa ggaagtcgagggcagcctggagtcgagggcccccctggctctccgggccctcggggaatg cagggagaccgcggtgtgcctggcctgccggggtcccaggggccagcgggtaaagagcca agtgaccagcatataagacaagtctgcatgcgcgtgatgcaggagcagctggctcagctg gcggccagtctgcgcaggcctgagtctggggctgctggcctgcctggccggcctgggcct cctggtcctcctggttcccctggagacagcggctttcctgggcaagctggagctcgagga ttaccaggccttaaggggcctccaggcctcatcggcctcaagggacccaaaggtgaaatg ggagacaaaggagagagaggagtcacggtacgagggcctaaagggttgcctgggcctcct ggcctgccaggtgagccggggagacccggctacggccgggacgggcgtgatggcgagagg ggtccacccgggctacctggacagcctggcattcctgggcctcccggtcctgctggtccc aacggctactgcgacccatcagcctgcaacctgcaagccattgcggcaccacagtctctg aaggactccaacatgaagggaccctga

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