KEGG   Lepisosteus oculatus (spotted gar): 102690522
Entry
102690522         CDS       T07349                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03420  Nucleotide excision repair
loc04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    102690522 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    102690522 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:loc04121]
    102690522 (ercc8)
   03400 DNA repair and recombination proteins [BR:loc03400]
    102690522 (ercc8)
Ubiquitin system [BR:loc04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     102690522 (ercc8)
DNA repair and recombination proteins [BR:loc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      102690522 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_RIG_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EIPR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th NBCH_WD40 WD40_MABP1-WDR62_1st WD_LRWD1 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_LRRK2 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_IFT140_2nd Beta-prop_RIG_1st Nucleoporin_N
Other DBs
NCBI-GeneID: 102690522
NCBI-ProteinID: XP_015222777
Ensembl: ENSLOCG00000007753
LinkDB
Position
LG2:complement(23386835..23411066)
AA seq 407 aa
MSFDKMLGFLSARQMGLDDPLRLRRAESTRRVLSLELNKDRDVERIHSNGVNTLDIEVIE
GRYMLSGGADGVIVIYDLENLSKKPHYTCKSVCTVGRSHQHVHKFSVETVQWYPHDTGMF
TSSSFDKTLKVWDTETLKPAEVFNFEGTVYCHHMSPIARKHCLIAVGTKDPKVQLCDLKS
GSRIHILQGHRGEVLSVKWSPRYEHILATASTDSQVRVWDVRKASGSLFTLDQHNGEKSK
ASSEAANTAHNGRVNGLCFTSDGLHLLTTGTDDRMRLWNSASGENTLVNYGKVCNESRKG
LKFTLSRGCSPEFVFVPCGSTIVVYALYTGELVTVLRGHYNNVDCCEFHPDLQDLYSGGK
DCNILAWVPSPRKPALEDDTEGSNKSGNQSSLNPAFEDAWSSSDEDG
NT seq 1224 nt   +upstreamnt  +downstreamnt
atgtcgtttgataagatgctgggttttttgtccgcacgacagatgggactagatgatcct
cttcggttacgacgcgctgaatcaacaaggagggtgctcagcttagaactgaacaaagat
agagacgtggagcggattcacagtaatggcgtgaacaccctcgatatagaagtcatagaa
ggaagatacatgttgtcaggtggggcagatggagtcatcgtaatctatgatcttgagaac
ctcagcaagaaaccacactatacttgcaaatcagtttgcacagtaggcaggtcccaccag
catgtacacaaattcagtgtggagactgtgcagtggtatccacacgacacaggcatgttc
acttcaagttcttttgacaaaacgttgaaagtatgggacacagaaacactaaaacctgct
gaggtcttcaattttgagggtacagtgtactgtcatcacatgtctcccattgcaaggaaa
cactgtttgatagcagttggtaccaaagatcccaaagtacagctgtgtgacttgaagtct
ggttctcgtatccacattctgcagggtcacaggggagaagtgctctctgtgaaatggtct
cctcgatatgagcatattctggcaactgcaagcactgacagccaagtgagagtgtgggat
gtgaggaaggcatcaggaagcttatttacactagaccagcacaatggtgagaagtctaaa
gcctcatcagaggcagctaacactgctcacaatggacgcgtcaatgggctgtgctttacc
agcgatggactccaccttctgaccactgggacggatgaccgcatgagactgtggaacagc
gcctccggagaaaacactctggtgaattatgggaaggtttgcaacgaaagtcgcaagggg
ttgaagttcacgttgtccagaggctgcagcccggagttcgtgtttgtgccctgtggtagc
accattgtggtgtatgccttgtacactggagagctggtcactgtactgagagggcactat
aacaatgtggactgctgtgaattccaccctgacctgcaggatctctacagtggtggaaag
gactgtaacattctagcctgggttccttctcctcggaaacctgctcttgaagatgacaca
gaagggtccaacaaaagtgggaaccagtcaagcttaaatccagcttttgaagatgcttgg
agtagcagtgatgaagatggatga

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