Lepisosteus oculatus (spotted gar): 102690932
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Entry
102690932 CDS
T07349
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
loc00536
]
102690932 (col25a1)
Glycosaminoglycan binding proteins [BR:
loc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102690932 (col25a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102690932
NCBI-ProteinID:
XP_015200625
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Position
LG4:45484741..45725638
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AA seq
739 aa
AA seq
DB search
MSMKVAGGKGDARCDEDMEEKAGSQRQDYCCRTFANALSFTFSLVSVAFCIFLGIQTSVI
KERVFALETGSGQLLYHQVPGFSVDQLNSMIQERVDELLAQRSYEHLAKIRTARQAPPDC
NCPAGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGNQGPRMVFPKISHGFLSADQQLINR
RVIKGDQGQTGPPGPPGPPGPPGPRGPPGDTGKDGPRGLPGLQGDTGKPGEQGPVGPQGP
PGQKGSIGPPGISGVDGQKGELGERGEKGDMGESGPKGEVGEKGDAGSSAAGIKGEPGEP
GRSGQKGEPGLPGLPGLPGIKGEPGFMGPQGEPGLPGLPGTKGERGEAGPPGKGERGEPG
PMGQKGGQGEAGPQGLKGSKGDPGEKGESGSMGPRGPPGQKGDQGATEIIDYNGNIQEAL
QRITTITVTGPPGPPGPVGPQGIKGEPGSTGLPGLDGENGPKGSKGDMGIPGISGEKGAM
GLPGLPGVNGLKGEKGDPGLPGPQGPSIIGPPGAPGPHGPPGPMGPHGFLGPKGEPGLNG
LKGMRGEPGHKGDRGPLGLPGASGLDGKPGLRGMDGPVGPTGPAGPKGDRGERGPPGEPG
PRGPYGLPGTAGAPGLDGLPGLKGEKGDLGDRGEKGEKGKKGKKGPKGEKGEQGAPGLDA
PCPLGFRGFKGEKGEPGQPGLDGLDAPCQLVQYSLSYQTCMHVSFYLPTMQRYSTEHTAF
VFPLMHGLRMGQNSLLPST
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgaaggttgcgggaggtaaaggagacgcgaggtgcgatgaagacatggaggag
aaagcaggttcgcaaagacaggactactgttgccggacttttgcaaatgctctctctttc
acattttcccttgtgtctgtagcgttctgcatatttcttggtatacagacctccgttatc
aaagaaagagtattcgcattagaaactggaagcggacagttactttatcatcaggttcca
ggcttttctgtcgatcagctgaattcaatgatacaagaaagagtggatgaactactggct
cagagatcttacgaacatttggccaagataaggactgcacgtcaagctccacctgactgc
aactgcccggcaggtcctccaggaaagcgaggaaggagaggcagaaatggagaacctgga
cctcctggtcctcctggtccaaaaggtgaaaagggggatcaaggcaaccaaggaccacgg
atggtcttccctaagatcagtcatggctttctttccgctgatcagcagctcattaatcgc
cgagtcattaagggagatcagggtcagacaggccctccagggccccctgggcccccaggg
ccccctggtccaagagggcccccaggagacacaggaaaggatggtccaagagggttacca
gggctacagggagatacaggaaaaccaggagagcaggggccagtgggaccacagggacct
ccgggacaaaagggctcaattggacctccaggaatttcaggtgtagatggacagaagggt
gaattgggggaacgaggtgaaaagggcgacatgggggagagcggacctaaaggggaggtg
ggcgaaaagggtgatgcagggtcctctgcagcagggataaagggtgaaccgggagaacct
ggcagatcaggacaaaagggagagccaggactgcccgggttaccaggacttcctggaata
aagggtgaaccaggattcatgggaccccaaggagagcctggtttgccagggttgccagga
acaaagggtgagagaggagaggcagggccaccagggaaaggagaacgaggagaacccggt
cctatggggcagaagggagggcaaggtgaggccggaccccaaggcctcaaagggtcaaag
ggtgatcctggtgaaaagggggagtctgggtccatggggccacggggtccacctggacag
aagggagaccaaggagccacagagatcattgactataatggaaacatccaggaagcccta
cagaggattaccactataactgtcacgggtcccccaggacctcccggaccagtaggacca
cagggaataaagggagagccaggatccacaggtctgcctggactggatggtgagaatggc
cctaaaggttcaaaaggagacatgggcattcctggcatatctggagagaaaggagccatg
ggtctgcctggcctacctggtgttaatgggctgaaaggagaaaagggagatcctggtttg
ccaggtcctcagggaccttcaattataggtcctccaggagctcctggcccacatggtcct
ccaggcccaatgggaccccatggctttcttggacctaagggtgaaccagggttgaatggt
cttaagggaatgagaggggagccagggcacaagggtgacagaggaccccttggtctccct
ggagcatctggcttagatggaaagccaggactcaggggaatggacggtccagttggtcct
accggtccagcaggtcccaaaggtgacaggggtgaaagaggaccacctggtgaacctgga
ccaagaggaccttatggattaccgggcacagcaggagcacctggattagatgggttacca
ggcttaaagggagagaaaggagatcttggtgacagaggagaaaagggggaaaagggaaag
aaaggcaaaaaagggcctaagggggagaaaggtgaacagggtgcccctggattagatgca
ccttgcccattgggattccggggatttaagggtgaaaagggggaaccaggtcagcctggc
ctagatgggctggatgccccctgccaattggtacagtattctctttcctaccaaacctgt
atgcatgtttctttttacctacctacaatgcaaaggtattcaactgaacacaccgccttt
gtatttccattgatgcatggcttgcgcatgggtcaaaattcacttttaccttccacatga
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