Lepisosteus oculatus (spotted gar): 102691000
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Entry
102691000 CDS
T07349
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03030
DNA replication
loc03410
Base excision repair
loc03420
Nucleotide excision repair
loc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102691000 (lig1)
03410 Base excision repair
102691000 (lig1)
03420 Nucleotide excision repair
102691000 (lig1)
03430 Mismatch repair
102691000 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
loc03032
]
102691000 (lig1)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102691000 (lig1)
Enzymes [BR:
loc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102691000 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
102691000 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102691000 (lig1)
DNA replication proteins [BR:
loc03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102691000 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102691000 (lig1)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102691000 (lig1)
NER (nucleotide excision repair)
Other NER factors
102691000 (lig1)
MMR (mismatch excision repair)
Other MMR factors
102691000 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
102691000
NCBI-ProteinID:
XP_015201500
Ensembl:
ENSLOCG00000001777
LinkDB
All DBs
Position
LG5:complement(1099026..1116923)
Genome browser
AA seq
997 aa
AA seq
DB search
MQRSIASFFRPAAAGDGKTKGSARTAEKTEPAKSPLKPQNGTPEPDSPIKKTAKRSRRIA
DSDDDEPRGGETQGATPAPQAAAEQVTPVSAPPQPRTDSAPDVSSPSGSEGSPGSEGAVI
SPSGIPKRRTARKQFPKRKLEITEERRASPPEDAGPLETSEKQGSSPVGGQPAGAAESDP
SPGAEEGTGDIAEMKVEPGPGEARESEPSEDAGKKRLDATSKPAAPKAGAASPLQKPDDA
NAKTKMSARPAASRVKSPQADKKEGKKGEEVGAGKSVEPGKVEPAKSRAVSSFFTPKKAA
VKLEKSDGEKPAVQTSPPESRETKGGSFFGKPAKSETAAGTPSDYNPSKSNYHPVEDACW
SHEQRVPYLAVARTFEKIEEESARLKNIETLANLFRSVIALTPADLLPCLYLCLNRIGPA
FLGLELGVGETVLMKAVAQATGRQLDKIKAESQEKGDLGLVAESSRSNQRMMFTPPKLTA
TGVFGKLTDIAKMTGNASTHKKIDIIKGLFVACRFSEARYIVRSLGGKLRIGLAEQSVLA
ALAQAVCLTPPGQEFPPKEVNAGKGMSPEARKAWIEERALILKQTYCELPNYDVIVPVLL
KEGIEELPKHCKLTPGVPLKPMLAHPTRGIGEVMKRFDEATFTCEYKYDGERAQIHILEN
GEVHIYSRNQENNTSKYPDIISRIPQVKKEEVRSCILDAEAVAWDREKKQIQPFQVLTTR
KRKDVDASDIKVQVCVYAFDLLYLNGESLVRQPLSKRRALLRESFTEREGEFMFACSLDS
DNTDVIAEFLEQSVKDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTLDLAV
IGAYIGKGKRTGTYGGFLLACYDEENEEYQSICKIGTGFKDEDLEQHFNFLKDHTLPSPR
PYYRVDQSAEPDVWLEAVQVWEVKCADLSLSPVHKAAMGLADSDKGISLRFPRFLRIRDD
KKPEEATTGAQVAELYRKQQQIQNQASGEKADLEDYY
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggagtatagcctcgttcttccggcccgcggcggctggcgacgggaagaccaag
gggagcgcgaggaccgcggagaagacggagcccgccaagtcccccctgaaaccgcagaac
ggcaccccggagcccgactcccccataaagaagacggccaagagaagccgacgcatcgcg
gacagcgacgatgacgagccgcgtggcggggagacccagggggccactcctgcaccccag
gctgctgcggagcaggtcacccctgtatctgcccctccccagcccaggacggattctgcc
ccggacgtcagctccccctccggcagcgagggctcccccggcagcgagggcgccgtcatc
tccccctccggcatccccaagcggcgcaccgcccggaaacagttccccaaaaggaaactg
gagatcacagaggagagacgggcgtcgcccccagaagacgccgggccgttggagacctcg
gagaagcagggaagctcgcccgtcgggggacagccagccggagcggccgaaagcgacccc
tcgcccggggcggaggaggggacgggagacatcgccgagatgaaggtcgagccggggccg
ggcgaggcgagagaatcggagccctccgaggacgctgggaaaaagaggctggacgccacg
tccaagccagctgcgccgaaggcaggggccgcctcccctctccagaagcccgacgacgcc
aacgccaagaccaagatgtcggccagaccggctgcgagcagggtgaagtccccccaggcg
gacaagaaagaagggaagaagggagaggaggtcggagctgggaagtcggtggagccaggg
aaggtggaacctgccaagagccgggccgtcagcagcttcttcacccccaagaaggcggcc
gtcaagctggagaaatcggatggcgagaagcctgcggtccagacgtctccgccggagagc
agggagaccaaaggagggagcttcttcggcaagccggcaaagtcggagacggctgccggc
accccctcagactacaacccctcgaagtcgaactaccaccctgtggaggacgcctgctgg
agccacgagcagagagtcccgtacctggctgtcgctcggacctttgagaagatcgaggag
gagtctgccaggctgaagaacatcgagaccctggccaacctgttccgctcggtgatcgct
ctgaccccggcggacctgctgccctgcctgtacctgtgtctgaaccgcatcgggccggcc
ttcctgggcctggagctgggcgtgggggagaccgtgctcatgaaggccgtcgcccaggca
acaggccggcagctggacaagatcaaggcggagtcccaggagaagggagacctgggattg
gtggccgagagctcccgtagcaaccagcgcatgatgttcacgccccccaagctgacggcg
acgggggttttcggcaagctgacggacatcgccaagatgacggggaacgcgtcgacgcac
aaaaagatcgacatcatcaaggggctgttcgtggcctgccgcttctccgaggcgcgttac
atcgtccggtctctgggcgggaagctgcggatcggcctggcggagcagtcggtcctggcc
gctctggcgcaggcggtctgcctgaccccgccgggacaagaattcccacctaaggaggtg
aatgctgggaagggaatgtccccggaagctcggaaagcctggattgaggagagagccctc
atcctcaaacagacttactgcgagcttcccaactatgacgttatcgttccggtcttgctg
aaagaggggatcgaggagctgccgaaacactgcaagctgacacctggggtgcccctgaag
cccatgctggctcaccccacgaggggcatcggcgaagtcatgaagaggttcgacgaagcc
accttcacctgcgagtacaagtacgatggggaacgggcgcagatccacatccttgaaaac
ggagaggttcacatctacagccgaaaccaagagaacaacaccagcaaataccccgacatc
atctccagaatcccgcaggtgaagaaagaagaggtgcgctcctgcattttggatgcggag
gccgtggcctgggacagggagaagaagcagatccagcctttccaggtgctgaccactcgc
aagaggaaggatgtggacgcctccgatatcaaagtccaagtgtgcgtgtacgccttcgac
ctgctgtatctgaatggagagtcgctggtccgccagcccctgtccaagcgccgcgccctg
ctgcgggagagcttcacagagcgggagggggagttcatgttcgcctgctccctcgactcc
gacaacaccgatgtcatcgccgaattcctggagcagtccgtcaaagattcctgcgagggc
ctgatggtgaaaaccctcgagaaggacgctacgtacgagatcgccaagcggtcgcacaac
tggctcaagttgaagaaggactacctggagggcgtgggggacacgctggacttggctgtg
atcggagcctacatcggcaaagggaaaagaactgggacctacggcgggttcctgttggct
tgttatgacgaggagaatgaggagtaccagtcaatctgcaagattgggacgggattcaaa
gatgaagatttggagcagcattttaacttcctaaaggaccacaccctgcccagtccccgc
ccctattatcgcgtggaccaatcggccgagcccgacgtgtggttggaggcggtccaggtg
tgggaggtgaagtgcgccgacctgtcgctgtcccctgttcacaaggcggcaatgggactg
gcggactccgataaagggatctctctgcgcttccctcgtttcttgcggatcagggatgac
aagaaaccggaagaggccaccaccggggcgcaggtggcagaattgtaccgaaaacagcag
cagatccagaaccaggcctccggcgagaaggcagacctggaggactattactga
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integrated database retrieval system
