KEGG   Lepisosteus oculatus (spotted gar): 102691218
Entry
102691218         CDS       T07349                                 
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
  KO
K11600  exosome complex component RRP41
Organism
loc  Lepisosteus oculatus (spotted gar)
Pathway
loc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:loc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102691218 (exosc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loc03019]
    102691218 (exosc4)
Messenger RNA biogenesis [BR:loc03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     102691218 (exosc4)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     102691218 (exosc4)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 102691218
NCBI-ProteinID: XP_006634290
Ensembl: ENSLOCG00000008878
LinkDB
Position
LG9:20036771..20041747
AA seq 245 aa
MAGLELLSDQGYRLDGRKPSELRKVQARMGVFAQGDGSAYIEQGNTKALAVVYGPHEVRG
SRGKALHDRAVINCQFSMATFSTAERKRRPHGDRKSSEVSQHLKQTFEAAILTQLYPRSQ
IDIYVKILQSDGGNYSASVNAATLAVIDAGIPLRDYVCACSAGFVEDTPLADLCHAEEAG
GGTVLSLALLPQGGQIALLQMDARLHQDHLDTLMEAAMTACRSLSTVLDRVVREHLQEVT
TLTAE
NT seq 738 nt   +upstreamnt  +downstreamnt
atggccgggttagagttgctgtccgatcagggataccggctggatgggaggaagccttcc
gagctccgcaaggtgcaagcccgcatgggggtcttcgcgcaaggcgatgggtctgcctac
atcgagcaggggaacaccaaggcgctcgcggtagtgtacggaccgcatgaggtgcgtggg
tctcgcgggaaggccctccatgaccgcgcggtcatcaactgccagttcagcatggccacc
ttcagcacggcggagaggaagaggaggccgcatggcgaccgcaagtccagtgaggtcagc
cagcacctcaagcagacttttgaggcggccatcctgacacagctgtacccgcgctcacag
atagacatatacgtcaagatcctgcagtcagatggggggaattacagcgccagcgtcaac
gcggccaccctggccgtgatcgacgccggcatccctctgcgcgactacgtgtgcgcctgc
agcgcgggcttcgtggaggacacgcccctggcggacctgtgccacgccgaggaggcgggg
ggcggcacggtgctcagcctggccctgctgccgcagggaggccagatcgccctgctgcag
atggacgcccggctgcaccaggaccacttggacactctgatggaggcagccatgaccgcc
tgcaggagcctgagcacagtgctggacagagtggtcagggagcacctgcaggaggtgacc
acgctgaccgctgagtga

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