Lepisosteus oculatus (spotted gar): 102691783
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Entry
102691783 CDS
T07349
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102691783 (taf1c)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
102691783 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
GOLD_2
Motif
Other DBs
NCBI-GeneID:
102691783
NCBI-ProteinID:
XP_015217344
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All DBs
Position
LG2:10131196..10148868
Genome browser
AA seq
1104 aa
AA seq
DB search
MAGRTDSAFPPMLFPQAYNTGPPGRTAGVLPVVGGWGVYGQIRGVDRLVPENAGLEGKIK
IEAQHKVKGEEWRPTEPIVCPLLPPNSDCKIPSSANSHALDFPEHLRNFYLDNHQDAFGT
MSRLLDEHFYFGYGNLQGSVKENTRSMRTMMDFIENVGYRKCPLTYVQKRARSYSYLFDD
VIYDIPPALLGELLHEELMMQSDRELFQEAATGGAMGYIPFEETDASQQGYLVYPRKAAL
NHLCILFHVCQTYLPLLKVGGGSNLFLEAFVWQRSFKEVTCLAERKTKQDTRLHLITQWE
CFFFFCASTVHDILCLPRRLNCNATDFHKVVLEFQEDGGPRLSVRNKPVEFKLNGTIRQI
SADCVQDQGQRNSPCSLLLLNSNRKEHLVQFLLFQTALRSKSLSMSIISLVTFFILHASI
PNCALKMGSSLSEAWGFTGSSCQSPERHGQTLFRIGETAECKQRERVILPRYLRDVNAYH
YLITTQYSAYIMDERFPGLPMIKWEHMMKYPPMFTQVLAGAPWGRSSKVLLGSQCCQELM
LLQYSGGSQAACQSLGPPQKLCNPPDCLKHLPIQIPHRQESVAERLRSPGAGLAALYHNQ
GMESLCVLQLSAAGDIFYQMLRPESDPGSEDVPISTESTAEEAEEMRAETGEPNLDHTSD
SDLDDTRSEAQDDETAVHRVDVMTNRQAGQHLDSEIHLQADGETGEPVPVNRTDCTRSVL
VGSRPGRSPTIPVVASKKVLSRWKRWMAALFDMAERAPRETNSLWVVSTKKLMSSRAFRK
HASEDGRYEEVKRELKETMRSRGVLQGSRTHLKALERVPLPEAVAPLDWGDDLSRRLTVA
WEGRWNNWWVEKLGLNRDQKIMALRQKRKRQKESRARRRPALPASFTSSVGYQSDLDDRM
SWCSATSNFGDGQSVASSSAIQSLSAQEDVLPASRGTKERTPVLSAPSQSEGPEAKSLSD
SSVSSRVPRLPPGNKVVAPPDDPDEPDAGSFSTLGSPRPTGILKPSGSFARSEQEWVPGH
GSQNSQPARKNDLFSSPTSRPATQGMLKMTNQEAVEENGFSFLLSPTSQTFNISSTQTHP
CVMPSSQSSVRSSQPKKKRSRMGF
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggccgggcgtacggacagtgcgtttcccccgatgcttttcccccaggcctacaacacc
gggcctccgggcaggaccgctggcgtcctgccggttgtaggcggctggggggtctacggc
cagatccggggagtggaccgtcttgtgccggagaatgctggcctagagggtaagatcaag
atagaagcccaacacaaagtaaaaggagaggaatggaggccgacagagcccattgtatgt
cccttgctgcccccgaattcagattgcaagattccctcatcagctaactctcatgcctta
gacttcccagaacatttgcggaatttctacctggataaccatcaagatgcctttgggact
atgagccgtctgttagatgaacacttctattttggttacggtaatctacagggaagtgtg
aaggagaacaccaggagcatgaggacaatgatggactttatagaaaatgttggttaccga
aagtgtccattaacctatgtccagaagagagcgaggtcctacagctacctgtttgatgat
gtgatctatgacatccctcctgctctgctgggagagctcctccatgaggaactgatgatg
cagagtgacagagagctgttccaggaggcggccaccgggggcgctatggggtacattcca
ttcgaagagacggacgcctcccagcaaggctaccttgtgtatcccagaaaggctgccctg
aaccatctttgtatcctctttcacgtctgccaaacttatctgcctcttctgaaagttgga
ggaggtagtaacctcttcttggaagcgtttgtgtggcaaaggagttttaaagaagtaacg
tgtctcgctgagagaaaaacaaaacaggacaccagactgcacttaatcacccaatgggaa
tgttttttttttttctgtgcaagtacagttcacgacatactgtgcctgcctcggcgcctt
aactgcaatgccacagatttccacaaggtggtgctggagttccaggaagatggcggtcct
aggcttagcgtcagaaacaagcccgtggagttcaaactgaatggaaccatccggcagatc
agcgccgactgtgtgcaggatcaaggtcagagaaattctccctgttccctgttgctgctc
aattcaaatcgaaaagagcatcttgtgcagtttttgcttttccaaactgcattaagaagc
aaatcattaagcatgtccatcatttcattggtcaccttctttattcttcatgccagcatc
ccaaactgtgctctaaaaatgggaagttctttgtctgaagcttggggatttacaggaagt
tcttgtcagtctccagaacgtcacggccagactttgtttcgcattggagagactgcggag
tgcaagcaaagggagagagtgattctgcccagatacctccgagacgtcaatgcctaccac
tacctcattaccacacagtattctgcttacattatggacgagcgttttccgggtctgccc
atgatcaagtgggagcacatgatgaagtatccgcccatgtttacccaagtccttgctggg
gctccctggggcaggagcagcaaagtgttgttgggctctcagtgctgtcaggagctgatg
ctgctacagtattctggtggcagtcaagctgcgtgccagtctctgggacctccgcagaag
ctgtgtaacccccctgactgcctgaaacacctccccatccagatccctcacagacaagag
agtgtggcagagaggttacgatcacctggcgcaggcttggcggctttgtaccataaccaa
ggaatggagtccctttgtgtgctccagttgtctgcagcaggagacatcttctaccagatg
ctgagaccagaatcggaccctggaagtgaagacgtaccaataagcacagagtccacagca
gaagaggctgaggaaatgagagctgagacaggggaaccaaacttggaccacacctcagat
agtgatttggatgatacgaggagcgaagctcaagatgatgaaacggcggtgcaccgagta
gatgtgatgactaatcgtcaggcggggcagcatcttgactcggaaattcacttgcaagca
gacggagagactggggagcctgttcctgtgaaccggaccgactgtaccaggagtgtgctg
gtgggttccaggccagggaggagcccaaccattccagtggtggccagtaagaaggtcctc
agtcggtggaaaaggtggatggctgccttgtttgacatggcagagcgggctcctcgagaa
actaattctctctgggtagtaagcaccaagaagctcatgtcctccagggctttcagaaaa
cacgcttctgaggacggcaggtacgaggaagtgaagagggagctgaaggagaccatgagg
agtagaggtgtactccaaggcagccgcacgcacctgaaggccctggagagagtccccctt
ccagaggccgtggccccgttagactggggagatgacctgagccgtcggctcaccgtggcc
tgggagggcagatggaataactggtgggtcgagaagctggggctgaaccgcgaccagaag
atcatggccctgcgccagaaacggaagaggcagaaggagtccagggccaggcgacgaccg
gctctccccgcgagcttcacctcttcggtaggctatcagtccgacttggacgaccgtatg
agctggtgctccgccaccagcaatttcggagatggtcagagtgtggcctcttcatctgcc
atccaaagtctttctgcgcaagaggatgtgcttccagcatctcgtggcacaaaggagaga
accccggtcttgtccgcgcctagtcagagcgagggacctgaagcgaaaagtttgtccgat
tcctcagtttcctcgcgggtgccacgtttacccccaggcaataaggtggtggcgcctcca
gacgatcccgatgaaccagatgctggaagctttagtactttagggtctcctcggccaaca
ggtatcctaaagccttcaggctcatttgctaggagtgaacaggaatgggtcccgggtcac
gggtctcagaattcccaacccgcaaggaaaaacgatttgttctcctcacctacctcaagg
ccagcaactcaagggatgctaaaaatgacgaatcaggaagcggtagaggaaaatggcttt
tccttcctcttgtcccccacttcacagacattcaacatttcctctacacagacgcatccc
tgcgtgatgccgtcttctcaaagctccgtacggtcttcacagcctaagaagaaaaggtca
cgcatgggcttctaa
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