Lepisosteus oculatus (spotted gar): 102692299
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Entry
102692299 CDS
T07349
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102692299 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102692299 (smarcd2)
03036 Chromosome and associated proteins [BR:
loc03036
]
102692299 (smarcd2)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102692299 (smarcd2)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102692299 (smarcd2)
PBAF complex
102692299 (smarcd2)
GBAF(ncBAF) complex
102692299 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
102692299
NCBI-ProteinID:
XP_006638173
Ensembl:
ENSLOCG00000012004
UniProt:
W5N2B5
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All DBs
Position
LG15:complement(2565601..2585013)
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AA seq
497 aa
AA seq
DB search
MTSRGVYPMNTGSPLNPNINPMNSGGVRIVPSMQQNSGFRAMGSAASPYHQRPGMPPSRG
MPMGGMGVGPGAGPSYSSGLPMRAGLPQPAMDPFRKRLLQQQHQGLASHRRGIKRRKMAD
KILPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISNTY
SPAKPEGDDAEKIASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPDNHLVEW
HRMPTTQETDGFQVKRPGDISVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQA
LWLYIKTNKLQDCHEKEYINCNRYFRQIFGCSRMRFSEIPMKLAGLLQHPDPIIINHVIS
VDPNDQKKTACYDIDVEVDDPLKSQMSSFLSSTTNQQEIAALEMKIHETIESINQLKTQR
DFMLSFSNNPQEFIQDWLKSQCRDYKLMTDTAGNPEEERRTEFYQAPWVQEAVGRYIFSK
VQQRRQELEQVLGIRLT
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaagaggtgtgtacccaatgaatacaggtagcccactgaaccctaatattaac
cctatgaattcggggggtgtcagaatagttccttcaatgcaacagaacagcggattccgg
gccatgggctcagctgcttccccgtaccatcagcgcccaggaatgccccccagtcggggc
atgccaatgggagggatgggagtggggcctggtgctggaccctcctatagctccggcctg
cctatgagagcaggtttgccccagccagcgatggaccctttccgaaagagactgctccag
cagcagcatcaaggactcgcaagccacagacggggcattaagagacgaaagatggcagac
aagatactaccacaaaggatcagggagctggtgccagagtcgcaggcctacatggatctg
ttggcctttgagcgcaagcttgatcagaccattgctcgcaagcgcatggagatacaggaa
gccattaagaaacccataacgcaaaagcgcaagttgcgaatctacatctccaacacctac
agccctgccaaacccgagggagacgacgcagagaagattgcctcctgggagctgagagtg
gaggggaaactcctagaagacccggggaaacaaaagaggaaattctcatccttcttcaag
agcttagtgattgagttggacaaagagctctatgggccagacaatcaccttgtagagtgg
cacagaatgcccacaactcaggagacagatgggttccaggtgaagagaccaggagacatc
agtgtgaagtgtacattactgctaatgctggatcatcagccgccccagtataaactggac
cctcgcctggctcggctgttgggtgttcacacgcagacccgcgccagcatcatgcaggcc
ctgtggctgtatataaagaccaacaaactgcaggactgtcacgagaaagagtacatcaac
tgcaaccgctacttcagacagatttttggttgctctcgaatgaggttctctgaaattcct
atgaagctggctgggctactgcagcaccctgatcccatcatcattaaccatgtcataagt
gtggatcccaatgaccagaagaagacagcctgctatgatattgatgtagaggtggacgat
cccttaaaaagccagatgagcagttttctctcttctaccactaaccagcaggagattgct
gctctggaaatgaagatccatgagaccattgaatccatcaaccaacttaaaacccaacga
gacttcatgctgagcttcagtaacaatcctcaggagttcattcaggactggctaaagtca
caatgtcgtgactataagttaatgactgacacagctggaaaccctgaagaagaaaggaga
actgagttttaccaggccccgtgggtacaggaggctgtggggaggtacattttctcaaag
gtccagcagcgaaggcaagaactcgaacaggtacttgggattcgactcacttaa
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