Lepisosteus oculatus (spotted gar): 102692427
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Entry
102692427 CDS
T07349
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102692427 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102692427 (smarcc1)
03036 Chromosome and associated proteins [BR:
loc03036
]
102692427 (smarcc1)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102692427 (smarcc1)
Chromosome and associated proteins [BR:
loc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102692427 (smarcc1)
PBAF complex
102692427 (smarcc1)
GBAF(ncBAF) complex
102692427 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
102692427
NCBI-ProteinID:
XP_006635727
Ensembl:
ENSLOCG00000004394
UniProt:
W5MA68
LinkDB
All DBs
Position
LG11:complement(10748590..10783453)
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AA seq
1082 aa
AA seq
DB search
MATAAIAAGGAGSGGPAAGQGGSGASTLSVGRKKDGGPSAKYWESSETVSQLESVRLWIG
KHYKKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKPGGALCH
ILGSAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTVEKTLVQNNCLTRPIVYVLPDIEPKQ
ANKLKDIIKRHQGSITEDKTKATHHIYPTPPSLDEEEWLRPVMRKDKQVLVHWGMYPDSY
DTWVSASDVDGEVEEPPNPEKPWKVHAKWVLDTDSFNEWMNEEDYEVDESKKPVSFRQRI
FMRDEESSRTPDRKDRKAAASGKKRRRSPSPPPTPVESRKKGGKKGHPGPYWKRRGHREE
EEPEEDLTKDMEDPTPVPNMEEVTLPKNVNPKKDSENTPVKGGTVADLDEQEDEPMVTGG
KEEEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYASWFDYNCIHEIERRALPEFFNGKNK
SKSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQVD
AESRPLPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPASQQMLNFPEKGKEKPTDLQNFG
LRTDIYAKKNPKSKGGSAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEE
FSRVREEVPAELVEAHVKKVQEAARSTGRLDPAYGLESSGIAGTSPDEPEKTESTEPEKM
ETDSDSQQPEKAESKEEVEKPSETTERQPEREKMKNESQECEREEAESEGGEESKTDKEK
EESQESGEISKEGEGEDGRKKVEPEVEEGNIATAAAAALASAATKAKHLAAVEERKIKSL
VALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQAFHMEQLKYAEMKAR
QQMEQQQAAAAQNPGAHHGPPPGMMGHQPPSGFPPMHHPMGSHHPPQTGPMGGVSQPMPG
RVMPSAPPPGGPPPPNMPPMMGPRHPGAPNGMYPTPPAGQPDGIAPAPVGPPVAAPSRVA
EN
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcagcaattgcagctgggggagcgggctccgggggcccggcggccgggcaa
gggggcagcggtgcttcgactctctcggtgggcagaaagaaagatgggggcccgtctgct
aagtactgggagagctcggagacggtctctcagctggagtcggtccggctatggatcgga
aagcactacaagaagtatgtccaggctgactctccatctaacaagtccctggctggtctg
gtggtacagctgttgcagttccaggaggatgcctttggaaggagagtcaacaaccctgct
ctcaccaaactgcctgcaaaatgtttcctggacttcaagccagggggtgctctgtgtcac
atcctgggttcagcttacaaattcaagagtgagcagggctggcgccgttttgacctacag
aacccctcacggatggaccggaatgtggagatgttcatgactgtagagaaaactctagtg
cagaacaactgtctgaccagacccattgtatatgtgcttcctgatattgagccaaaacag
gccaacaagctgaaggacatcatcaagagacaccagggctccatcacagaggacaagacc
aaggccacacaccacatctaccctacacccccctcgctagatgaagaggagtggctgcgt
cctgttatgcgcaaggacaagcaggtgctggtgcactggggcatgtaccccgacagctat
gatacctgggtgtcagccagtgatgtggatggggaagtggaagagccgcccaaccctgag
aaaccttggaaggtccacgccaaatgggttctggacacggactccttcaacgagtggatg
aacgaggaggactatgaagtggacgagagcaagaagcctgtgagtttccgccagcgcatc
ttcatgcgcgatgaggagtcatcccgcactcctgaccgcaaggacaggaaggcagctgcc
agtgggaaaaagcggcggcgttcaccttctcctccgcccacccctgtcgagtcccgcaag
aagggaggaaagaagggccaccccggcccatactggaagcggcgtggccatcgcgaggag
gaggagccagaggaggatctcaccaaggatatggaggaccctacgcctgtgccgaacatg
gaggaagtcactctgcccaagaacgtgaacccaaagaaggacagtgagaacaccccagta
aagggaggcaccgtggccgatctggacgagcaggaggatgaacccatggtcactggaggc
aaggaggaggaagagcagggcaaggccgaggtgaaccggctgatcgactccagtgaggac
aacgtcacagagcagacgcaccacatcatcatccccagctatgcctcctggtttgactac
aactgtatccacgagattgagaggcgtgccttacctgagttcttcaatggcaagaacaag
tccaagtcacccgagatatacctcgcgtaccgtaatttcatgatcgatacgtaccggctg
aacccccaggagtacctcacctccacatcctgtcggagaaacctgactggggacgtctgc
gctgtgatgagggttcatgctttcctggaacagtgggggttgatcaattaccaggtggat
gcggagagccggccactgcccatgggccccccgccaaccccccacttcaacgtgctggca
gacaccccctctgggctggtgcctctccaccaccgccctccccaggtcccagcttcccag
cagatgctgaacttcccagaaaagggcaaagagaaacccacggacctccagaactttggg
ctccgcactgacatctacgccaaaaagaaccccaagagtaaaggaggcagtgctggcagg
gagtggactgaacaagagaccctgctgctcttagaggccctggagatgtacaaggatgac
tggaacaaggtgtcagagcacgtgggcagccgcacccaggacgagtgtatccttcatttc
ctgaggctgcccattgaggacccttacctggagaactcggacgcctccctgggcccgctg
gcctaccagcccgtccctttcagccagtcgggaaatcccgtaatgagcacggtggccttc
cttgcctctgtggttgaccctcgggtggcagccgccgcggccaaggcagcactggaggag
ttttcacgggtacgtgaggaggtcccggccgagctggttgaggcccatgtgaagaaagtg
caggaagccgcgagaagcacgggtagactggacccggcctatggcctggagagcagcggc
atcgcagggaccagtcctgacgagcccgaaaagacagaatcaacagagcctgaaaagatg
gagactgactcagactcccagcagcctgagaaggctgagagcaaagaggaggttgagaag
cccagcgagacaacagaaagacagcctgagagagagaagatgaagaacgagtcccaggag
tgcgagcgagaggaagctgaaagtgagggaggagaggaaagcaaaacagacaaggagaaa
gaggagagccaggagagcggtgagatcagtaaagagggcgagggggaagatggcagaaag
aaagtggagcctgaggtggaggagggcaacattgccacagctgctgctgctgccctggct
tctgcggccaccaaagccaagcacctggctgcagtggaggagagaaagatcaagtcactg
gtggccctgctggtggagacacagatgaagaagctggagatcaagctgagacactttgaa
gagctggagaccatcatggacagggagaaggaggcgctggagcagcagagacagcagctg
ctgacggagcggcaggctttccacatggagcagctgaagtacgcagagatgaaggctcgt
cagcaaatggagcagcagcaggcggctgccgcgcagaatcccggggcccaccatggtccc
ccacctgggatgatgggccatcagcccccctctgggttccccccaatgcaccaccccatg
ggctctcaccatcccccacagacagggccgatgggaggggtcagccagcccatgcctggg
cgtgtcatgcccagtgccccgccccctggtgggcctccccctcccaacatgcctcccatg
atgggaccccgacacccaggagcccccaatggcatgtatcctactcctccagctggacag
cctgatggaatagcaccagctccagtgggacctccagtggccgctccttcccgtgtggct
gagaattag
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integrated database retrieval system
